Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1471

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1470: 9838 - K18592 GGT1_5, CD224 gamma-glutamyltranspeptidase / glutathione hydrolase / leukotriene-C4 hydrolase, at 368201 to 370453 9838 mRNA_1471: 9839 - K08874 TRRAP transformation/transcription domain-associated protein, at 370707 to 382935 9839 mRNA_1472: 9840 - HMMPfam-Zinc finger, C3HC4 type (RING finger)-PF00097,ProSitePatterns-Zinc finger RING-type signature.-PS00518,SMART-Ring finger-SM00184,SUPERFAMILY--SSF57850, at 383411 to 384622 9840

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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370,035 - 9838 mRNA_1470 0.81 -1.0
370,684 - -3.2
380,464 - 9839 mRNA_1471 0.80 -3.3
383,011 - -1.1
383,012 - -0.1
383,012 - -0.9
383,012 - -0.8
383,013 - -1.3
383,017 + 0.1
383,021 + -0.3
383,022 - -1.9
383,038 + -2.0
383,038 - 1.6
383,045 - -1.4
383,047 + -0.5
383,057 + 0.3
383,196 - 0.1
383,357 - -2.3
383,372 - -1.0
383,796 + 9840 mRNA_1472 0.32 -0.4