Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1460

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1459: 9827 - HMMPfam-F-box-like-PF12937,ProSiteProfiles-F-box domain profile.-PS50181,SMART-A Receptor for Ubiquitination Targets-SM00256,SUPERFAMILY--SSF52047,SUPERFAMILY--SSF81383, at 342894 to 344123 9827 mRNA_1460: 9828 - K06911 K06911 uncharacterized protein, at 344701 to 345995 9828 mRNA_1461: 9829 - K02503 HINT1, hinT, hit histidine triad (HIT) family protein, at 346696 to 347592 9829

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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343,794 + 9827 mRNA_1459 0.73 -2.1
343,800 - 9827 mRNA_1459 0.74 1.4
343,812 + 9827 mRNA_1459 0.75 -4.0
343,814 - 9827 mRNA_1459 0.75 -1.5
343,842 - 9827 mRNA_1459 0.77 -0.7
343,845 - 9827 mRNA_1459 0.77 -2.2
343,851 + 9827 mRNA_1459 0.78 -0.5
343,851 + 9827 mRNA_1459 0.78 -1.4
343,877 - 9827 mRNA_1459 0.80 -1.7
343,989 - 9827 mRNA_1459 0.89 -1.5
344,112 - 0.0
344,140 + -1.0
344,148 + 0.5
344,285 + -0.0
344,288 + -3.1
344,296 - -0.8
344,302 + -0.4
344,411 - 0.1
344,430 - 1.1
344,717 - 0.1
344,747 - 0.2
344,865 - 9828 mRNA_1460 0.13 0.6
345,020 - 9828 mRNA_1460 0.25 -0.9
345,172 + 9828 mRNA_1460 0.36 0.2
345,614 + 9828 mRNA_1460 0.71 -1.7
345,883 + -0.8
345,887 - -0.2
345,887 - -0.5
346,045 + -1.5
346,183 - -0.9
346,184 - -2.2
346,320 - -3.1
346,483 + -1.2
346,504 - -0.9
346,922 + 9829 mRNA_1461 0.25 -3.7