Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1452

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1451: 9819 - K11987 PTGS2, COX2 prostaglandin-endoperoxide synthase 2, at 321832 to 325764 9819 mRNA_1452: 9820 - K07241 nixA high-affinity nickel-transport protein, at 326244 to 328401 9820 mRNA_1453: 9821 - HMMPfam-G-patch domain-PF01585,ProSiteProfiles-G-patch domain profile.-PS50174,SMART-glycine rich nucleic binding domain-SM00443, at 328591 to 330027 9821

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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325,261 - 9819 mRNA_1451 0.87 -2.4
325,279 + 9819 mRNA_1451 0.88 2.0
325,560 + -1.0
325,681 + -2.0
325,814 + -1.3
325,834 + 1.1
325,848 - -0.7
325,852 + -2.9
325,854 - -1.0
325,862 - -1.4
325,862 - -2.6
325,862 - 1.0
325,863 + -0.3
325,868 - 0.0
325,875 + -1.8
325,880 - 1.9
325,884 + -1.5
325,931 - -0.2
325,942 - -0.1
325,943 + -1.3
325,982 - -0.3
325,993 - 0.2
325,994 + -1.0
325,996 + -2.8
325,999 + -1.8
326,000 + -0.4
326,002 + -2.3
326,003 - 1.0
326,008 + -2.5
326,010 + 0.4
326,144 - -0.2
326,302 + -1.3
327,311 - 9820 mRNA_1452 0.49 0.7
327,426 - 9820 mRNA_1452 0.55 -1.9
327,461 - 9820 mRNA_1452 0.56 -1.2
328,324 - -0.9
328,516 + -1.0
328,803 + 9821 mRNA_1453 0.15 -0.0
328,811 + 9821 mRNA_1453 0.15 -0.7
328,812 - 9821 mRNA_1453 0.15 -1.6
329,236 + 9821 mRNA_1453 0.45 -2.1