Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1451

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1450: 9818 - K20826 RPAP1 RNA polymerase II-associated protein 1, at 317721 to 321691 9818 mRNA_1451: 9819 - K11987 PTGS2, COX2 prostaglandin-endoperoxide synthase 2, at 321832 to 325764 9819 mRNA_1452: 9820 - K07241 nixA high-affinity nickel-transport protein, at 326244 to 328401 9820

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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321,083 - 9818 mRNA_1450 0.85 -0.3
321,146 - 9818 mRNA_1450 0.86 -0.6
321,152 - 9818 mRNA_1450 0.86 -1.8
321,153 + 9818 mRNA_1450 0.86 -0.2
321,644 - -0.7
321,860 + -0.6
321,903 - 0.1
322,279 - 9819 mRNA_1451 0.11 -4.0
322,898 - 9819 mRNA_1451 0.27 -0.6
323,660 + 9819 mRNA_1451 0.46 -2.3
323,737 + 9819 mRNA_1451 0.48 -1.7
323,777 - 9819 mRNA_1451 0.49 -1.7
324,666 + 9819 mRNA_1451 0.72 -0.8
324,786 + 9819 mRNA_1451 0.75 -4.1
324,792 + 9819 mRNA_1451 0.75 0.4
324,956 + 9819 mRNA_1451 0.79 -3.4
325,090 - 9819 mRNA_1451 0.83 -2.6
325,261 - 9819 mRNA_1451 0.87 -2.4
325,279 + 9819 mRNA_1451 0.88 2.0
325,560 + -1.0
325,681 + -2.0
325,814 + -1.3
325,834 + 1.1
325,848 - -0.7
325,852 + -2.9
325,854 - -1.0
325,862 - -1.4
325,862 - -2.6
325,862 - 1.0
325,863 + -0.3
325,868 - 0.0
325,875 + -1.8
325,880 - 1.9
325,884 + -1.5
325,931 - -0.2
325,942 - -0.1
325,943 + -1.3
325,982 - -0.3
325,993 - 0.2
325,994 + -1.0
325,996 + -2.8
325,999 + -1.8
326,000 + -0.4
326,002 + -2.3
326,003 - 1.0
326,008 + -2.5
326,010 + 0.4
326,144 - -0.2
326,302 + -1.3