Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1442

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1441: 9809 - K17871 ndh1 NADH-ubiquinone reductase (non-electrogenic), at 285760 to 287814 9809 mRNA_1442: 9810 - K03549 kup KUP system potassium uptake protein, at 288246 to 290884 9810

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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287,300 + 9809 mRNA_1441 0.75 -1.4
287,409 - 9809 mRNA_1441 0.80 -0.1
287,430 - 9809 mRNA_1441 0.81 -0.5
287,738 + 0.1
287,739 + -1.1
287,803 + -0.3
287,852 - -0.5
287,882 + 0.7
287,893 - -2.7
287,915 - -0.3
288,355 + -1.4
288,455 - -2.2
288,470 - -0.9
288,730 + 9810 mRNA_1442 0.18 -0.7
288,740 + 9810 mRNA_1442 0.19 -3.6
288,752 - 9810 mRNA_1442 0.19 0.9
288,759 + 9810 mRNA_1442 0.19 -1.2
289,035 + 9810 mRNA_1442 0.30 -1.2
289,167 + 9810 mRNA_1442 0.35 -0.0
289,188 + 9810 mRNA_1442 0.36 -1.7
289,484 + 9810 mRNA_1442 0.47 -2.7
289,584 - 9810 mRNA_1442 0.51 -1.1
289,737 + 9810 mRNA_1442 0.56 -2.9
289,753 - 9810 mRNA_1442 0.57 -0.2
290,074 + 9810 mRNA_1442 0.69 -0.8
290,465 - 9810 mRNA_1442 0.84 -1.2
290,480 + 9810 mRNA_1442 0.85 -0.9
290,485 - 9810 mRNA_1442 0.85 -2.7
290,621 - -0.9
290,881 - -1.7
291,074 + -2.8
291,085 - -1.8
291,098 - -3.5
291,109 + 0.7
291,141 - -0.8
291,142 - -1.7
291,187 + -1.1
291,228 + -0.5
291,252 - -0.7
291,323 - 0.4
291,346 - 1.7
291,372 + -2.2
291,372 - -2.9
291,372 - -1.6
291,386 - -4.0
291,386 - -2.3
291,391 - -0.9
291,410 + -1.5
291,808 - 0.7
291,816 - -1.2