Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1439

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1438: 9806 - Hypothetical Protein, at 280347 to 281494 9806 mRNA_1439: 9807 - K03544 clpX, CLPX ATP-dependent Clp protease ATP-binding subunit ClpX, at 281812 to 284553 9807 mRNA_1440: 9808 - Hypothetical Protein, at 284752 to 285459 9808

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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280,901 + 9806 mRNA_1438 0.48 -1.0
280,917 + 9806 mRNA_1438 0.50 -0.6
281,024 - 9806 mRNA_1438 0.59 0.4
281,048 - 9806 mRNA_1438 0.61 -2.5
281,084 + 9806 mRNA_1438 0.64 -2.7
281,231 + 9806 mRNA_1438 0.77 -0.5
281,357 + 9806 mRNA_1438 0.88 -1.0
281,363 - 9806 mRNA_1438 0.89 -0.7
281,371 + 9806 mRNA_1438 0.89 -0.0
281,619 - -0.7
281,629 - -0.5
281,739 - -1.4
281,753 - -2.3
281,756 + -0.6
281,757 + -0.2
281,888 - 0.2
281,941 - 1.7
281,944 + -0.5
282,052 - -0.3
282,195 - 9807 mRNA_1439 0.14 -2.5
282,499 + 9807 mRNA_1439 0.25 -0.0
282,503 + 9807 mRNA_1439 0.25 0.0
282,648 + 9807 mRNA_1439 0.30 -1.8
283,237 - 9807 mRNA_1439 0.52 -0.2
283,336 + 9807 mRNA_1439 0.56 -0.6
283,677 + 9807 mRNA_1439 0.68 -2.5
283,708 - 9807 mRNA_1439 0.69 -0.4
283,714 - 9807 mRNA_1439 0.69 -0.1
283,771 + 9807 mRNA_1439 0.71 -3.1
283,809 + 9807 mRNA_1439 0.73 -0.5
283,936 - 9807 mRNA_1439 0.77 -1.6
284,343 - -1.5
284,363 + -2.0
284,625 - -0.6
284,688 - -1.8
284,810 - -1.0
285,088 + 9808 mRNA_1440 0.47 -1.0
285,092 - 9808 mRNA_1440 0.48 -0.7
285,356 - 9808 mRNA_1440 0.85 -1.3