Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1422

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1421: 9789 - K06950 K06950 uncharacterized protein, at 239485 to 240342 9789 mRNA_1422: 9790 - K12236 NFX1 transcriptional repressor NF-X1, at 240937 to 244730 9790 mRNA_1423: 9791 - Hypothetical Protein, at 245191 to 249551 9791

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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239,956 + 9789 mRNA_1421 0.55 -1.2
240,092 + 9789 mRNA_1421 0.71 -0.5
240,093 - 9789 mRNA_1421 0.71 -1.5
240,669 - -2.9
240,814 - -1.1
240,820 - -1.4
240,821 - -3.4
240,823 - -1.7
240,823 + -0.0
240,823 - -1.4
240,826 + -0.4
240,830 + -2.2
240,832 + -0.5
240,834 + -2.1
240,835 + -1.6
240,846 + -2.4
240,852 - 0.1
240,853 - -2.4
240,853 + 0.5
240,853 - -1.4
240,854 + -1.8
240,857 + -1.6
240,858 - 0.8
240,863 + -1.9
240,865 + -1.9
240,870 + -0.5
240,875 - -1.5
240,876 + -1.3
240,878 - -1.0
240,887 + -2.8
240,971 - 0.5
241,007 + -2.7
241,143 + -2.6
241,167 + -2.4
241,631 + 9790 mRNA_1422 0.18 -2.7
241,764 + 9790 mRNA_1422 0.22 -1.7
242,175 + 9790 mRNA_1422 0.33 -2.3
242,278 - 9790 mRNA_1422 0.35 0.5
242,329 + 9790 mRNA_1422 0.37 -1.6
242,458 + 9790 mRNA_1422 0.40 -0.4
242,945 + 9790 mRNA_1422 0.53 0.2
243,044 - 9790 mRNA_1422 0.56 -2.5
243,209 + 9790 mRNA_1422 0.60 -2.0
243,369 + 9790 mRNA_1422 0.64 -1.0
244,080 - 9790 mRNA_1422 0.83 -1.2
244,102 - 9790 mRNA_1422 0.83 0.2
244,174 - 9790 mRNA_1422 0.85 -0.1
244,266 - 9790 mRNA_1422 0.88 0.9
244,267 + 9790 mRNA_1422 0.88 -2.3
244,413 + -0.8
244,529 - -5.1
244,607 + 0.5
244,712 - 0.1
244,717 + -1.1
244,842 + -1.2
244,848 - -0.6
244,901 - -1.4
244,957 - -1.3
244,993 - 0.1
245,004 - -0.9
245,011 + -1.0
245,154 - -2.2
245,496 + -1.1
245,685 - 9791 mRNA_1423 0.11 -4.3