Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1420

Experiments: 40 hrs No Buoyancy Separation

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1419: 9787 - HMMPfam-PH domain-PF00169,ProSiteProfiles-PH domain profile.-PS50003,SMART-Pleckstrin homology domain.-SM00233,SUPERFAMILY--SSF50729, at 229918 to 235537 9787 mRNA_1420: 9788 - KOG4269 Rac GTPase-activating protein BCR/ABR, at 236131 to 238616 9788 mRNA_1421: 9789 - K06950 K06950 uncharacterized protein, at 239485 to 240342 9789

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
remove
235,180 + -3.2
235,459 + -1.2
235,570 - -1.7
235,729 + 0.0
235,736 - -0.6
235,741 + -0.3
236,036 + -1.7
236,051 + -1.0
236,053 - -0.4
236,322 - -3.3
236,522 - 9788 mRNA_1420 0.16 -2.0
236,825 + 9788 mRNA_1420 0.28 -1.4
236,942 + 9788 mRNA_1420 0.33 -1.1
237,319 + 9788 mRNA_1420 0.48 -3.5
237,366 + 9788 mRNA_1420 0.50 0.2
237,501 + 9788 mRNA_1420 0.55 -1.0
237,504 - 9788 mRNA_1420 0.55 -2.3
237,520 + 9788 mRNA_1420 0.56 -2.6
237,768 - 9788 mRNA_1420 0.66 -0.6
238,237 - 9788 mRNA_1420 0.85 -2.8
238,332 + 9788 mRNA_1420 0.89 -2.0
238,630 + 0.8
238,779 + 0.4
238,902 - -0.1
238,908 - -1.5
238,921 - -1.6
239,066 - -2.9
239,073 + -1.2
239,084 - -2.0
239,209 - -1.8
239,214 - -0.5
239,233 + -1.5
239,358 + -0.6
239,427 - -0.7
239,429 - -3.8
239,458 + -1.4
239,469 + -3.3
239,503 + -3.0
239,535 + -0.8