Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1418

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1417: 9785 - K01567 pdaA peptidoglycan-N-acetylmuramic acid deacetylase, at 227247 to 228373 9785 mRNA_1418: 9786 - HMMPfam-Fungal protein of unknown function (DUF1748)-PF08520, at 229007 to 229464 9786 mRNA_1419: 9787 - HMMPfam-PH domain-PF00169,ProSiteProfiles-PH domain profile.-PS50003,SMART-Pleckstrin homology domain.-SM00233,SUPERFAMILY--SSF50729, at 229918 to 235537 9787

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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228,236 + 9785 mRNA_1417 0.88 1.2
228,244 + 9785 mRNA_1417 0.88 -1.5
228,390 + -2.6
228,529 + -1.7
228,535 + -2.1
228,559 + -2.5
228,832 - -0.7
228,961 - -1.1
228,987 - -0.3
229,106 + 9786 mRNA_1418 0.22 -0.9
229,114 + 9786 mRNA_1418 0.23 -0.6
229,246 + 9786 mRNA_1418 0.52 0.1
229,410 + 9786 mRNA_1418 0.88 1.2
229,526 - -3.6
229,856 - -0.7
229,971 - -1.4
229,995 - -4.1
230,154 + -0.8
230,175 + -0.5
230,280 - -0.4
230,411 - -1.5
230,443 + -1.1