Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1412

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1411: 9779 - Hypothetical Protein, at 205641 to 206403 9779 mRNA_1412: 9780 - K11699 RDR, RDRP RNA-dependent RNA polymerase, at 206910 to 211871 9780

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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205,911 - 9779 mRNA_1411 0.35 -0.3
206,008 - 9779 mRNA_1411 0.48 -1.7
206,220 + 9779 mRNA_1411 0.76 -1.7
206,326 - 9779 mRNA_1411 0.90 0.2
206,327 - -0.6
206,353 + -2.9
206,458 - -0.2
206,471 + -2.3
206,608 - 0.3
206,633 + -1.5
206,803 - 1.1
206,968 + -0.1
207,082 - -0.0
207,516 + 9780 mRNA_1412 0.12 -3.6
207,546 - 9780 mRNA_1412 0.13 0.8
207,549 + 9780 mRNA_1412 0.13 -0.5
207,647 - 9780 mRNA_1412 0.15 -3.1
207,843 - 9780 mRNA_1412 0.19 -2.3
207,965 + 9780 mRNA_1412 0.21 -2.7
207,973 - 9780 mRNA_1412 0.21 -0.1
207,987 + 9780 mRNA_1412 0.22 -0.5
208,099 - 9780 mRNA_1412 0.24 -3.4
208,114 + 9780 mRNA_1412 0.24 -1.6
208,228 - 9780 mRNA_1412 0.27 0.7
208,562 + 9780 mRNA_1412 0.33 -0.6
208,668 + 9780 mRNA_1412 0.35 -2.4
208,688 + 9780 mRNA_1412 0.36 -3.8
209,033 + 9780 mRNA_1412 0.43 -0.1
209,285 + 9780 mRNA_1412 0.48 -1.1
209,321 - 9780 mRNA_1412 0.49 -1.1
209,392 - 9780 mRNA_1412 0.50 2.7
209,400 + 9780 mRNA_1412 0.50 -0.6
209,599 + 9780 mRNA_1412 0.54 0.1
209,713 + 9780 mRNA_1412 0.56 -2.0
209,762 + 9780 mRNA_1412 0.57 1.4
210,139 + 9780 mRNA_1412 0.65 -2.0
210,892 - 9780 mRNA_1412 0.80 -0.7
211,423 - -2.0
211,427 + -1.0
211,814 + 0.2
212,142 + -1.3
212,226 - 1.6
212,228 - -1.2
212,369 - -2.3
212,543 + 0.3
212,702 - 0.4
212,811 - -0.8