Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1390

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1389: 9757 - Hypothetical Protein, at 155335 to 156152 9757 mRNA_1390: 9758 - KOG0988 RNA-directed RNA polymerase QDE-1 required for posttranscriptional gene silencing and RNA interference, at 156559 to 159898 9758 mRNA_1391: 9759 - HMMPfam-Phosphotransferase enzyme family-PF01636,SUPERFAMILY--SSF56112, at 160091 to 161111 9759

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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155,576 + 9757 mRNA_1389 0.29 -4.1
155,663 + 9757 mRNA_1389 0.40 -0.0
155,667 - 9757 mRNA_1389 0.41 -1.6
155,678 + 9757 mRNA_1389 0.42 -3.5
155,679 - 9757 mRNA_1389 0.42 -0.0
155,685 + 9757 mRNA_1389 0.43 -1.3
155,687 - 9757 mRNA_1389 0.43 0.6
155,690 - 9757 mRNA_1389 0.43 -3.9
155,696 - 9757 mRNA_1389 0.44 -0.3
155,715 - 9757 mRNA_1389 0.46 -1.9
155,749 + 9757 mRNA_1389 0.51 -1.6
155,764 + 9757 mRNA_1389 0.52 -0.2
155,816 + 9757 mRNA_1389 0.59 -1.7
155,834 - 9757 mRNA_1389 0.61 -0.6
155,853 + 9757 mRNA_1389 0.63 0.6
155,859 - 9757 mRNA_1389 0.64 -0.1
155,861 - 9757 mRNA_1389 0.64 -2.2
155,861 + 9757 mRNA_1389 0.64 -2.6
155,861 - 9757 mRNA_1389 0.64 -1.9
155,861 + 9757 mRNA_1389 0.64 -1.0
155,866 - 9757 mRNA_1389 0.65 -2.5
155,872 + 9757 mRNA_1389 0.66 -0.2
155,876 + 9757 mRNA_1389 0.66 -0.7
155,878 + 9757 mRNA_1389 0.66 -1.1
155,887 + 9757 mRNA_1389 0.67 -1.4
155,998 - 9757 mRNA_1389 0.81 -0.3
156,021 + 9757 mRNA_1389 0.84 -2.6
156,156 + -0.3
156,157 - -3.7
156,173 + -2.3
156,723 - 0.3
156,876 - -1.8
156,887 + -0.4
156,905 + 9758 mRNA_1390 0.10 1.5
157,160 - 9758 mRNA_1390 0.18 -1.3
158,039 - 9758 mRNA_1390 0.44 -1.1
158,041 - 9758 mRNA_1390 0.44 -0.8
158,361 - 9758 mRNA_1390 0.54 -2.2
158,371 + 9758 mRNA_1390 0.54 -0.3
158,493 - 9758 mRNA_1390 0.58 -1.7
158,569 - 9758 mRNA_1390 0.60 -0.5
159,091 + 9758 mRNA_1390 0.76 -0.7
159,213 - 9758 mRNA_1390 0.79 -0.4
159,645 - -2.4
159,657 + -0.1
159,659 - -1.2
159,909 + -1.0
159,954 - -2.3
160,369 + 9759 mRNA_1391 0.27 -1.8
160,664 - 9759 mRNA_1391 0.56 -1.9
160,693 + 9759 mRNA_1391 0.59 -0.3
160,802 - 9759 mRNA_1391 0.70 -0.2
160,850 + 9759 mRNA_1391 0.74 -1.4