Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1389

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1389: 9757 - Hypothetical Protein, at 155335 to 156152 9757 mRNA_1390: 9758 - KOG0988 RNA-directed RNA polymerase QDE-1 required for posttranscriptional gene silencing and RNA interference, at 156559 to 159898 9758

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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154,755 - 0.5
154,788 + 0.2
154,918 - -3.1
155,056 + -1.1
155,060 + -3.1
155,069 - -0.9
155,091 - 0.5
155,127 + -0.2
155,216 + 0.4
155,226 + -1.3
155,231 - -1.5
155,239 + -0.7
155,249 + -1.6
155,349 + -1.7
155,354 - -2.0
155,365 - -0.2
155,366 - -1.5
155,380 + -0.5
155,389 + -0.8
155,391 - -1.7
155,392 - -3.3
155,394 - -0.6
155,404 + -0.6
155,502 + 9757 mRNA_1389 0.20 -2.5
155,503 - 9757 mRNA_1389 0.21 -3.4
155,527 - 9757 mRNA_1389 0.23 -3.8
155,533 - 9757 mRNA_1389 0.24 -2.2
155,544 - 9757 mRNA_1389 0.26 -1.4
155,576 + 9757 mRNA_1389 0.29 -4.1
155,663 + 9757 mRNA_1389 0.40 -0.0
155,667 - 9757 mRNA_1389 0.41 -1.6
155,678 + 9757 mRNA_1389 0.42 -3.5
155,679 - 9757 mRNA_1389 0.42 -0.0
155,685 + 9757 mRNA_1389 0.43 -1.3
155,687 - 9757 mRNA_1389 0.43 0.6
155,690 - 9757 mRNA_1389 0.43 -3.9
155,696 - 9757 mRNA_1389 0.44 -0.3
155,715 - 9757 mRNA_1389 0.46 -1.9
155,749 + 9757 mRNA_1389 0.51 -1.6
155,764 + 9757 mRNA_1389 0.52 -0.2
155,816 + 9757 mRNA_1389 0.59 -1.7
155,834 - 9757 mRNA_1389 0.61 -0.6
155,853 + 9757 mRNA_1389 0.63 0.6
155,859 - 9757 mRNA_1389 0.64 -0.1
155,861 - 9757 mRNA_1389 0.64 -2.2
155,861 + 9757 mRNA_1389 0.64 -2.6
155,861 - 9757 mRNA_1389 0.64 -1.9
155,861 + 9757 mRNA_1389 0.64 -1.0
155,866 - 9757 mRNA_1389 0.65 -2.5
155,872 + 9757 mRNA_1389 0.66 -0.2
155,876 + 9757 mRNA_1389 0.66 -0.7
155,878 + 9757 mRNA_1389 0.66 -1.1
155,887 + 9757 mRNA_1389 0.67 -1.4
155,998 - 9757 mRNA_1389 0.81 -0.3
156,021 + 9757 mRNA_1389 0.84 -2.6
156,156 + -0.3
156,157 - -3.7
156,173 + -2.3
156,723 - 0.3
156,876 - -1.8
156,887 + -0.4
156,905 + 9758 mRNA_1390 0.10 1.5