Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1378

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1377: 9745 - Hypothetical Protein, at 129264 to 129958 9745 mRNA_1378: 9746 - KOG2214 Predicted esterase of the alpha-beta hydrolase superfamily, at 130369 to 133964 9746 mRNA_1379: 9747 - HMMPfam-Ubiquitin-2 like Rad60 SUMO-like-PF11976,SUPERFAMILY--SSF54236, at 134077 to 136225 9747

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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129,394 + 9745 mRNA_1377 0.19 -0.5
129,578 + 9745 mRNA_1377 0.45 -1.1
129,667 - 9745 mRNA_1377 0.58 -1.0
129,680 + 9745 mRNA_1377 0.60 -0.1
129,690 + 9745 mRNA_1377 0.61 -0.8
129,841 - 9745 mRNA_1377 0.83 2.8
129,858 - 9745 mRNA_1377 0.85 -0.7
129,965 - -3.0
129,981 - -3.0
129,996 + -2.7
129,996 - -0.2
130,156 - -1.4
130,289 - 0.2
130,290 - 0.0
130,296 + -1.2
130,311 - -0.5
130,405 - 2.0
130,412 + -0.8
130,419 - -0.4
130,421 + -2.3
130,424 - 0.1
130,694 - -2.1
130,715 - -3.0
130,733 + 9746 mRNA_1378 0.10 1.5
130,982 + 9746 mRNA_1378 0.17 -1.9
131,000 + 9746 mRNA_1378 0.18 -2.5
131,173 - 9746 mRNA_1378 0.22 -0.5
131,278 - 9746 mRNA_1378 0.25 -0.5
131,302 - 9746 mRNA_1378 0.26 2.3
131,386 + 9746 mRNA_1378 0.28 -1.6
131,416 + 9746 mRNA_1378 0.29 -1.1
131,476 + 9746 mRNA_1378 0.31 -0.8
131,755 + 9746 mRNA_1378 0.39 -1.7
131,856 + 9746 mRNA_1378 0.41 -2.3
131,942 + 9746 mRNA_1378 0.44 -1.0
132,476 - 9746 mRNA_1378 0.59 -2.4
132,608 - 9746 mRNA_1378 0.62 -2.5
132,612 + 9746 mRNA_1378 0.62 -1.6
132,629 + 9746 mRNA_1378 0.63 -1.3
132,634 - 9746 mRNA_1378 0.63 0.2
132,650 + 9746 mRNA_1378 0.63 -0.5
132,782 - 9746 mRNA_1378 0.67 -3.0
132,946 + 9746 mRNA_1378 0.72 -2.3
133,060 + 9746 mRNA_1378 0.75 -3.6
133,099 - 9746 mRNA_1378 0.76 -2.6
133,105 + 9746 mRNA_1378 0.76 0.1
133,317 + 9746 mRNA_1378 0.82 -1.1
133,441 - 9746 mRNA_1378 0.85 -0.6
133,507 + 9746 mRNA_1378 0.87 -0.3
133,625 - 0.6
133,696 - -1.8
134,093 - -1.4
134,259 + -2.4
134,368 - 9747 mRNA_1379 0.14 -0.4
134,416 + 9747 mRNA_1379 0.16 0.6
134,476 + 9747 mRNA_1379 0.19 -2.1
134,567 + 9747 mRNA_1379 0.23 0.4
134,764 - 9747 mRNA_1379 0.32 1.4
134,768 - 9747 mRNA_1379 0.32 -1.2
134,774 - 9747 mRNA_1379 0.32 -2.5
134,879 - 9747 mRNA_1379 0.37 -3.0
134,946 + 9747 mRNA_1379 0.40 0.2
134,947 - 9747 mRNA_1379 0.40 -0.2
134,962 + 9747 mRNA_1379 0.41 -1.9