Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1368

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1367: 9735 - K03233 EEF1G elongation factor 1-gamma, at 106812 to 108790 9735 mRNA_1368: 9736 - K03233 EEF1G elongation factor 1-gamma, at 109072 to 110968 9736 mRNA_1369: 9737 - HMMPfam-Glutathione S-transferase, N-terminal domain-PF13417,ProSiteProfiles-Soluble glutathione S-transferase N-terminal domain profile.-PS50404,ProSiteProfiles-Soluble glutathione S-transferase C-terminal domain profile.-PS50405,SUPERFAMILY--SSF52833, at 111145 to 112135 9737

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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108,237 + 9735 mRNA_1367 0.72 -1.9
108,573 - 9735 mRNA_1367 0.89 0.3
108,710 - 0.6
108,849 + -2.4
108,856 + -2.5
108,862 - -2.4
108,865 + -1.9
108,999 - -2.0
109,812 + 9736 mRNA_1368 0.39 2.4
110,135 - 9736 mRNA_1368 0.56 -2.7
110,704 + 9736 mRNA_1368 0.86 -0.8
110,709 - 9736 mRNA_1368 0.86 -1.1
110,727 - 9736 mRNA_1368 0.87 -0.9
110,744 - 9736 mRNA_1368 0.88 -1.0
110,865 - -2.7
110,867 - -2.2
110,867 + -0.7
111,008 - -0.4
111,023 + -3.5
111,047 - -0.1
111,048 + 0.4
111,181 - -1.9
111,182 - -0.2
111,195 - -2.8
111,332 + 9737 mRNA_1369 0.19 1.4
111,344 - 9737 mRNA_1369 0.20 -1.8
111,588 + 9737 mRNA_1369 0.45 1.2
111,749 + 9737 mRNA_1369 0.61 -1.3
111,770 + 9737 mRNA_1369 0.63 -1.3