Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1354

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1353: 9721 - HMMPfam-Starch binding domain-PF00686,ProSiteProfiles-CBM20 (carbohydrate binding type-20) domain profile.-PS51166,SMART-Starch binding domain-SM01065,SUPERFAMILY--SSF49452, at 67980 to 69503 9721 mRNA_1354: 9722 - Hypothetical Protein, at 69556 to 71202 9722 mRNA_1355: 9723 - SUPERFAMILY--SSF50685, at 72198 to 73021 9723

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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68,589 + 9721 mRNA_1353 0.40 -1.1
68,662 + 9721 mRNA_1353 0.45 -2.4
68,678 - 9721 mRNA_1353 0.46 -2.8
68,841 - 9721 mRNA_1353 0.56 -2.2
68,922 + 9721 mRNA_1353 0.62 -1.9
69,141 + 9721 mRNA_1353 0.76 -0.3
69,287 - 9721 mRNA_1353 0.86 -1.6
69,565 + -0.9
69,623 - -0.9
69,805 - 9722 mRNA_1354 0.15 -0.1
69,830 - 9722 mRNA_1354 0.17 -1.4
69,849 + 9722 mRNA_1354 0.18 1.1
69,905 - 9722 mRNA_1354 0.21 -2.7
69,940 - 9722 mRNA_1354 0.23 -0.8
70,447 + 9722 mRNA_1354 0.54 -0.8
70,452 - 9722 mRNA_1354 0.54 -1.6
70,532 - 9722 mRNA_1354 0.59 -1.8
70,539 + 9722 mRNA_1354 0.60 -0.9
70,546 + 9722 mRNA_1354 0.60 -1.4
70,729 + 9722 mRNA_1354 0.71 -1.7
70,989 + 9722 mRNA_1354 0.87 -1.2
71,005 - 9722 mRNA_1354 0.88 -0.7
71,103 + -1.5
71,144 + -2.1
71,234 - -2.9
71,301 + -1.1
71,420 - -0.4
71,423 + -1.9
71,448 - -2.4
71,556 + -2.2
71,591 + -1.9
71,612 - -0.7
71,721 + -0.9
71,735 - -1.8
71,873 + -2.3
72,058 + -2.0
72,155 + -2.6
72,158 + -1.2