Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1353

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1352: 9720 - Hypothetical Protein, at 66471 to 67100 9720 mRNA_1353: 9721 - HMMPfam-Starch binding domain-PF00686,ProSiteProfiles-CBM20 (carbohydrate binding type-20) domain profile.-PS51166,SMART-Starch binding domain-SM01065,SUPERFAMILY--SSF49452, at 67980 to 69503 9721 mRNA_1354: 9722 - Hypothetical Protein, at 69556 to 71202 9722

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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67,027 - 9720 mRNA_1352 0.88 -2.1
67,035 + 9720 mRNA_1352 0.90 2.3
67,052 - -1.5
67,314 - -2.6
67,363 - -1.1
67,365 - -2.4
67,372 + -2.4
67,498 - 1.2
67,510 - -1.8
67,514 + -0.8
67,597 + -2.3
67,644 - 2.2
67,645 + 1.6
67,714 + -0.3
67,758 + -1.5
67,775 + -0.9
67,780 + -1.2
67,785 - -1.9
67,787 - -1.5
67,794 - -2.0
67,799 - -1.6
67,799 - -0.9
67,800 + -2.2
67,804 + -0.1
67,814 - 0.0
67,814 - -0.5
67,817 - -2.3
67,822 + -0.8
67,834 - -3.4
67,898 - -0.7
67,943 + -2.3
67,946 + -0.6
67,964 + -2.5
67,989 + -0.8
67,999 - 0.4
68,303 + 9721 mRNA_1353 0.21 -3.5
68,397 - 9721 mRNA_1353 0.27 -0.3
68,408 - 9721 mRNA_1353 0.28 -2.0
68,520 + 9721 mRNA_1353 0.35 -1.8
68,589 + 9721 mRNA_1353 0.40 -1.1
68,662 + 9721 mRNA_1353 0.45 -2.4
68,678 - 9721 mRNA_1353 0.46 -2.8
68,841 - 9721 mRNA_1353 0.56 -2.2
68,922 + 9721 mRNA_1353 0.62 -1.9
69,141 + 9721 mRNA_1353 0.76 -0.3
69,287 - 9721 mRNA_1353 0.86 -1.6
69,565 + -0.9
69,623 - -0.9
69,805 - 9722 mRNA_1354 0.15 -0.1
69,830 - 9722 mRNA_1354 0.17 -1.4
69,849 + 9722 mRNA_1354 0.18 1.1
69,905 - 9722 mRNA_1354 0.21 -2.7
69,940 - 9722 mRNA_1354 0.23 -0.8
70,447 + 9722 mRNA_1354 0.54 -0.8
70,452 - 9722 mRNA_1354 0.54 -1.6