Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1351

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1350: 9718 - KOG3376 Uncharacterized conserved protein, at 60182 to 60785 9718 mRNA_1351: 9719 - Hypothetical Protein, at 61226 to 65910 9719 mRNA_1352: 9720 - Hypothetical Protein, at 66471 to 67100 9720

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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60,317 + 9718 mRNA_1350 0.22 -3.1
60,319 + 9718 mRNA_1350 0.23 -0.4
60,452 - 9718 mRNA_1350 0.45 -1.8
60,892 + -3.4
61,038 - -0.0
61,050 + -2.1
61,054 + -2.1
61,150 + -3.5
61,209 + -2.4
61,304 + -0.9
61,334 - -1.8
61,404 - -1.3
61,458 - -1.7
61,480 - -0.8
61,493 + -1.7
61,772 - 9719 mRNA_1351 0.12 -0.5
61,796 - 9719 mRNA_1351 0.12 -0.1
61,943 + 9719 mRNA_1351 0.15 0.3
61,953 + 9719 mRNA_1351 0.16 -1.7
61,989 - 9719 mRNA_1351 0.16 -2.1
62,249 - 9719 mRNA_1351 0.22 -0.6
62,402 + 9719 mRNA_1351 0.25 -2.8
62,499 - 9719 mRNA_1351 0.27 -2.2
62,630 + 9719 mRNA_1351 0.30 -1.1
62,710 + 9719 mRNA_1351 0.32 -2.9
62,711 + 9719 mRNA_1351 0.32 -0.2
62,721 - 9719 mRNA_1351 0.32 -0.3
62,777 + 9719 mRNA_1351 0.33 -0.9
62,826 + 9719 mRNA_1351 0.34 -0.5
63,009 + 9719 mRNA_1351 0.38 0.2
63,874 + 9719 mRNA_1351 0.57 -1.2
64,009 - 9719 mRNA_1351 0.59 -1.9
64,137 + 9719 mRNA_1351 0.62 0.3
64,157 + 9719 mRNA_1351 0.63 -3.0
64,185 - 9719 mRNA_1351 0.63 0.2
64,269 - 9719 mRNA_1351 0.65 -0.6
64,320 + 9719 mRNA_1351 0.66 -2.9
64,385 + 9719 mRNA_1351 0.67 -0.1
64,443 + 9719 mRNA_1351 0.69 -4.0
64,581 - 9719 mRNA_1351 0.72 -1.4
64,693 - 9719 mRNA_1351 0.74 -0.9
64,761 - 9719 mRNA_1351 0.75 -3.0
64,869 - 9719 mRNA_1351 0.78 0.6
64,905 - 9719 mRNA_1351 0.79 -0.2
64,956 - 9719 mRNA_1351 0.80 -0.9
64,966 + 9719 mRNA_1351 0.80 -0.3
65,138 - 9719 mRNA_1351 0.84 0.1
65,360 + 9719 mRNA_1351 0.88 -1.9
65,363 + 9719 mRNA_1351 0.88 -2.5
65,468 - -0.5
65,471 + -1.0
65,500 + 0.8
65,540 - -0.3
65,575 - -0.0
65,600 + -2.0
65,606 + 0.4
65,720 - -3.3
65,839 + -2.6
65,953 - -3.6
66,035 + -1.1
66,064 + -0.1
66,505 - 0.1
66,526 - -1.4
66,532 + -0.7
66,532 + -2.2
66,532 + -3.3
66,644 - 9720 mRNA_1352 0.27 -3.0
66,779 + 9720 mRNA_1352 0.49 -1.6
66,783 - 9720 mRNA_1352 0.50 -1.3
66,874 - 9720 mRNA_1352 0.64 -1.0