Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1342

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1341: 9709 - SUPERFAMILY--SSF52047, at 37179 to 38782 9709 mRNA_1342: 9710 - SUPERFAMILY--SSF52047, at 39256 to 40650 9710 mRNA_1343: 9711 - K00698 CHS1 chitin synthase, at 40770 to 45014 9711

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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38,287 + 9709 mRNA_1341 0.69 -2.5
38,300 + 9709 mRNA_1341 0.70 -1.8
38,300 + 9709 mRNA_1341 0.70 -0.7
38,434 - 9709 mRNA_1341 0.78 -2.8
38,473 + 9709 mRNA_1341 0.81 -2.9
38,566 - 9709 mRNA_1341 0.86 1.9
38,839 + -4.7
38,881 + -2.4
39,018 - -3.0
39,021 - -0.3
39,175 + 1.2
39,272 - -0.6
39,321 - 0.1
39,374 + -0.6
39,405 + 9710 mRNA_1342 0.11 -0.6
39,494 + 9710 mRNA_1342 0.17 -2.2
39,799 + 9710 mRNA_1342 0.39 -0.9
40,048 - 9710 mRNA_1342 0.57 -0.6
40,083 - 9710 mRNA_1342 0.59 -0.7
40,409 - 9710 mRNA_1342 0.83 -3.0
40,633 + -1.4
40,800 + -0.5
40,967 - 0.7
40,968 + -2.7
41,017 + -0.8
41,320 - 9711 mRNA_1343 0.13 -1.3
41,595 - 9711 mRNA_1343 0.19 -0.8