Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1334

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1333: 9701 - K08286 E2.7.11.- protein-serine/threonine kinase, at 21280 to 24099 9701 mRNA_1334: 9702 - HMMPfam-RNA polymerase II transcription elongation factor-PF09816, at 24367 to 26303 9702 mRNA_1335: 9703 - HMMPfam-Cysteine-rich TM module stress tolerance-PF12734, at 26595 to 27216 9703

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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24,130 - -0.3
24,140 + -0.7
24,279 - -0.7
24,423 + -0.0
24,436 - -2.0
24,447 + -2.1
24,568 - 9702 mRNA_1334 0.10 0.5
24,881 + 9702 mRNA_1334 0.27 0.5
24,993 - 9702 mRNA_1334 0.32 -0.9
25,061 - 9702 mRNA_1334 0.36 -1.1
25,177 - 9702 mRNA_1334 0.42 0.0
25,334 + 9702 mRNA_1334 0.50 -2.9
25,452 + 9702 mRNA_1334 0.56 -1.2
25,631 + 9702 mRNA_1334 0.65 -0.5
25,632 - 9702 mRNA_1334 0.65 1.4
25,769 - 9702 mRNA_1334 0.72 -0.1
25,776 + 9702 mRNA_1334 0.73 -0.4
25,909 + 9702 mRNA_1334 0.80 -0.1
26,059 + 9702 mRNA_1334 0.87 -1.2
26,211 + -0.4
26,263 + -1.0
26,367 - -1.5
26,497 + -1.1
26,539 - -0.2
26,663 - 9703 mRNA_1335 0.11 0.1
26,816 + 9703 mRNA_1335 0.36 -2.3
26,822 + 9703 mRNA_1335 0.36 -1.9
27,073 + 9703 mRNA_1335 0.77 -2.8