Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1330

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1329: 9697 - HMMPfam-SUZ domain-PF12752,ProSiteProfiles-SUZ domain profile.-PS51673, at 8055 to 8960 9697 mRNA_1330: 9698 - HMMPfam-LCCL domain-PF03815,ProSiteProfiles-LCCL domain profile.-PS50820,SUPERFAMILY--SSF69848, at 9234 to 11606 9698 mRNA_1331: 9699 - KOG2273 Membrane coat complex Retromer, subunit VPS5/SNX1, Sorting nexins, and related PX domain-containing proteins, at 11969 to 15219 9699

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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8,393 - 9697 mRNA_1329 0.37 -0.6
8,402 - 9697 mRNA_1329 0.38 -1.9
8,435 - 9697 mRNA_1329 0.42 -1.0
8,577 + 9697 mRNA_1329 0.58 -2.4
8,599 + 9697 mRNA_1329 0.60 -0.9
8,603 + 9697 mRNA_1329 0.60 -0.6
8,708 + 9697 mRNA_1329 0.72 -1.1
8,856 - 9697 mRNA_1329 0.88 -0.6
8,864 - 9697 mRNA_1329 0.89 -1.3
9,016 - -0.6
9,048 - -1.7
9,057 - 0.6
9,182 + -1.4
9,299 - -2.2
9,321 - -2.7
9,448 + -1.5
9,472 - 9698 mRNA_1330 0.10 -1.1
9,597 - 9698 mRNA_1330 0.15 -2.9
9,731 + 9698 mRNA_1330 0.21 -1.5
9,864 + 9698 mRNA_1330 0.27 -0.0
9,892 + 9698 mRNA_1330 0.28 -2.2
10,211 + 9698 mRNA_1330 0.41 -2.2
10,242 - 9698 mRNA_1330 0.42 -1.2
10,287 - 9698 mRNA_1330 0.44 -1.8
10,314 - 9698 mRNA_1330 0.46 -1.8
10,381 + 9698 mRNA_1330 0.48 -1.5
10,382 + 9698 mRNA_1330 0.48 -0.4
10,395 - 9698 mRNA_1330 0.49 0.1
10,480 - 9698 mRNA_1330 0.53 0.1
10,487 + 9698 mRNA_1330 0.53 -1.8
10,744 + 9698 mRNA_1330 0.64 -2.5
11,171 - 9698 mRNA_1330 0.82 -0.6
11,207 - 9698 mRNA_1330 0.83 -1.2
11,208 - 9698 mRNA_1330 0.83 -4.0
11,222 + 9698 mRNA_1330 0.84 -0.2
11,517 - 0.1
11,521 - -0.7
11,556 - -0.7
11,591 + -0.7
11,637 + -1.1
11,673 - -0.6
11,675 - -1.3
11,679 - -2.1
11,680 + -1.7
11,689 + 0.2
11,693 + -0.2
11,695 - 0.8
11,698 + -0.0
11,699 + -3.4
11,706 - -3.0
11,707 + -0.4
11,714 + -1.5
11,819 + -0.7
11,820 + -0.8
11,821 - -2.3
11,822 - -2.3
11,832 - -1.5
11,879 + -2.5
12,292 + -1.2