Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1293

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1292: 9660 - K10848 ERCC4, XPF DNA excision repair protein ERCC-4, at 846383 to 850419 9660 mRNA_1293: 9661 - Hypothetical Protein, at 850858 to 851999 9661 mRNA_1294: 9662 - K20369 ERV29, SURF4 ER-derived vesicles protein, at 852831 to 853984 9662

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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849,896 - 9660 mRNA_1292 0.87 -1.0
850,122 - -0.4
850,141 - -1.5
850,148 + -0.8
850,290 - -0.4
850,299 + -2.2
850,307 + -0.9
850,325 - -2.2
850,344 + -1.2
850,420 + -0.4
850,487 + -2.0
850,546 - -3.5
850,602 - -2.0
850,740 - -1.1
850,743 - -0.5
850,744 - -1.5
850,884 + -2.5
850,936 + -1.8
851,035 + 9661 mRNA_1293 0.15 -1.6
851,206 - 9661 mRNA_1293 0.30 -1.0
851,531 + 9661 mRNA_1293 0.59 -0.1
851,656 + 9661 mRNA_1293 0.70 -2.2
851,730 + 9661 mRNA_1293 0.76 -2.0
851,768 - 9661 mRNA_1293 0.80 -2.1
851,859 - 9661 mRNA_1293 0.88 -0.5
851,863 - 9661 mRNA_1293 0.88 -0.7
851,882 - 9661 mRNA_1293 0.90 0.3
851,891 - -1.6
851,897 + -0.6
851,900 + -0.1
851,906 - -1.2
851,914 - -2.2
851,917 + -0.4
852,137 - -0.8
852,277 - -1.2
852,338 - -1.1
852,343 + -2.4
852,353 + -0.2
852,356 + -2.3
852,359 + -1.9
852,362 + -0.6
852,372 + -0.9
852,490 - -2.0
852,492 + -0.0
852,501 - -2.5
852,510 - -0.8
852,637 - -2.4
852,925 - -2.7