Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1292

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1291: 9659 - KOG3350 Uncharacterized conserved protein, at 845100 to 846215 9659 mRNA_1292: 9660 - K10848 ERCC4, XPF DNA excision repair protein ERCC-4, at 846383 to 850419 9660 mRNA_1293: 9661 - Hypothetical Protein, at 850858 to 851999 9661

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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845,448 + 9659 mRNA_1291 0.31 -2.7
845,880 - 9659 mRNA_1291 0.70 -1.8
846,183 + -0.3
846,636 + -3.2
846,942 - 9660 mRNA_1292 0.14 -2.0
847,205 - 9660 mRNA_1292 0.20 -0.6
847,222 + 9660 mRNA_1292 0.21 0.7
847,772 + 9660 mRNA_1292 0.34 -1.9
847,877 + 9660 mRNA_1292 0.37 -0.4
848,237 + 9660 mRNA_1292 0.46 -1.0
848,511 + 9660 mRNA_1292 0.53 -0.1
848,525 - 9660 mRNA_1292 0.53 -0.0
848,672 - 9660 mRNA_1292 0.57 -1.7
849,014 + 9660 mRNA_1292 0.65 -1.7
849,450 - 9660 mRNA_1292 0.76 -0.8
849,688 - 9660 mRNA_1292 0.82 -0.8
849,740 + 9660 mRNA_1292 0.83 -1.5
849,896 - 9660 mRNA_1292 0.87 -1.0
850,122 - -0.4
850,141 - -1.5
850,148 + -0.8
850,290 - -0.4
850,299 + -2.2
850,307 + -0.9
850,325 - -2.2
850,344 + -1.2
850,420 + -0.4
850,487 + -2.0
850,546 - -3.5
850,602 - -2.0
850,740 - -1.1
850,743 - -0.5
850,744 - -1.5
850,884 + -2.5
850,936 + -1.8
851,035 + 9661 mRNA_1293 0.15 -1.6
851,206 - 9661 mRNA_1293 0.30 -1.0