Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1289

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1288: 9656 - HMMPfam-CFEM domain-PF05730,SMART--SM00747, at 839397 to 840221 9656 mRNA_1289: 9657 - K05681 ABCG2, CD338 ATP-binding cassette, subfamily G (WHITE), member 2, at 840459 to 844214 9657 mRNA_1290: 9658 - K03872 TCEB1 transcription elongation factor B, polypeptide 1, at 844469 to 844987 9658 mRNA_1291: 9659 - KOG3350 Uncharacterized conserved protein, at 845100 to 846215 9659

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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839,857 - 9656 mRNA_1288 0.56 -3.5
839,876 + 9656 mRNA_1288 0.58 -2.3
839,954 - 9656 mRNA_1288 0.68 -1.6
839,984 + 9656 mRNA_1288 0.71 -3.6
839,994 - 9656 mRNA_1288 0.72 1.9
840,006 + 9656 mRNA_1288 0.74 -0.8
840,011 - 9656 mRNA_1288 0.74 -1.3
840,138 - 9656 mRNA_1288 0.90 -1.2
840,292 - -3.2
840,292 + -4.0
840,293 + -1.2
840,294 + -1.5
840,294 + -1.2
840,295 - -0.7
840,296 + -1.0
840,343 - -0.8
840,345 + -3.0
840,369 + -0.1
840,370 + -1.9
840,374 - -0.4
840,376 - -2.0
840,505 - -2.7
840,511 + 0.3
840,514 - -0.6
840,779 + -1.5
840,807 - -3.6
840,810 + -3.3
840,957 - 9657 mRNA_1289 0.13 0.3
840,962 + 9657 mRNA_1289 0.13 -0.6
841,384 - 9657 mRNA_1289 0.25 -1.1
841,696 + 9657 mRNA_1289 0.33 1.5
841,698 + 9657 mRNA_1289 0.33 -0.7
841,825 - 9657 mRNA_1289 0.36 0.2
842,407 + 9657 mRNA_1289 0.52 -1.4
842,430 + 9657 mRNA_1289 0.52 -2.6
842,536 + 9657 mRNA_1289 0.55 0.5
842,548 - 9657 mRNA_1289 0.56 -0.3
842,841 + 9657 mRNA_1289 0.63 0.5
843,103 + 9657 mRNA_1289 0.70 -0.2
843,272 + 9657 mRNA_1289 0.75 1.4
844,116 - -2.4
844,456 - -1.0
844,559 - 9658 mRNA_1290 0.17 -3.2
844,863 + 9658 mRNA_1290 0.76 -1.3
844,877 - 9658 mRNA_1290 0.79 -2.1
845,010 - -0.8
845,011 + 0.5
845,019 - -1.0
845,029 + 1.6
845,169 + -1.3