Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1281

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1280: 9648 - HMMPfam-GDSL-like Lipase/Acylhydrolase-PF00657, at 825311 to 827101 9648 mRNA_1281: 9649 - HMMPfam-Peptidase M50B-like-PF13398, at 827341 to 829667 9649 mRNA_1282: 9650 - Hypothetical Protein, at 829731 to 830277 9650 mRNA_1283: 9651 - K02883 RP-L18e, RPL18 large subunit ribosomal protein L18e, at 830551 to 831805 9651

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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826,980 + -3.5
826,982 + -0.1
826,986 + -1.9
827,048 + -2.1
827,056 + -3.5
827,147 - -4.3
827,293 - -0.9
827,305 + -0.9
827,345 + -2.5
827,413 + -3.6
827,425 + -2.7
827,444 + -0.3
827,495 - -2.1
827,512 - -0.6
827,593 - 9649 mRNA_1281 0.11 -0.8
827,594 + 9649 mRNA_1281 0.11 -0.7
827,653 + 9649 mRNA_1281 0.13 -2.5
827,858 + 9649 mRNA_1281 0.22 -0.4
827,878 - 9649 mRNA_1281 0.23 -2.9
827,983 - 9649 mRNA_1281 0.28 -0.3
828,177 - 9649 mRNA_1281 0.36 -2.0
828,454 - 9649 mRNA_1281 0.48 -1.5
828,500 + 9649 mRNA_1281 0.50 -0.6
828,597 + 9649 mRNA_1281 0.54 -0.4
828,605 - 9649 mRNA_1281 0.54 -1.1
828,736 + 9649 mRNA_1281 0.60 -1.4
828,744 + 9649 mRNA_1281 0.60 -0.9
828,889 + 9649 mRNA_1281 0.67 -1.0
829,020 + 9649 mRNA_1281 0.72 -3.1
829,232 + 9649 mRNA_1281 0.81 -0.7
829,468 - -1.9
829,803 - 9650 mRNA_1282 0.13 -2.9
830,235 - -1.3
830,240 + -0.2
830,364 + 1.3
830,371 - -0.6