Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1278

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1277: 9645 - HMMPfam-NmrA-like family-PF05368,SUPERFAMILY--SSF51735, at 817751 to 818897 9645 mRNA_1278: 9646 - KOG1414 Transcriptional activator FOSB/c-Fos and related bZIP transcription factors, at 819504 to 821830 9646 mRNA_1279: 9647 - BLAST family 16 carbohydrate esterase [Melampsora laric..., at 822626 to 824265 9647

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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818,512 + 9645 mRNA_1277 0.66 -3.2
818,527 - 9645 mRNA_1277 0.68 -3.1
818,533 + 9645 mRNA_1277 0.68 -1.5
818,536 + 9645 mRNA_1277 0.68 -1.6
818,789 - -0.1
818,940 + -0.1
818,998 - -0.6
819,004 + -0.7
819,103 + -1.8
819,180 + -2.6
819,274 - -0.2
819,447 - -3.1
819,829 - 9646 mRNA_1278 0.14 -2.2
819,837 + 9646 mRNA_1278 0.14 -1.9
820,078 - 9646 mRNA_1278 0.25 -0.0
820,460 - 9646 mRNA_1278 0.41 0.5
820,460 - 9646 mRNA_1278 0.41 0.3
821,163 - 9646 mRNA_1278 0.71 -0.3
821,247 - 9646 mRNA_1278 0.75 -3.5
821,288 - 9646 mRNA_1278 0.77 -0.5
821,288 + 9646 mRNA_1278 0.77 -2.5
821,415 - 9646 mRNA_1278 0.82 -1.6
821,428 + 9646 mRNA_1278 0.83 -0.4
821,550 - 9646 mRNA_1278 0.88 -3.1
821,561 + 9646 mRNA_1278 0.88 -2.6
821,569 - 9646 mRNA_1278 0.89 -0.4
821,578 - 9646 mRNA_1278 0.89 -0.4
821,578 + 9646 mRNA_1278 0.89 -0.0
821,589 - 9646 mRNA_1278 0.90 -2.8
821,706 - -1.0
821,717 - -0.1
821,730 + -0.1
821,744 + -3.1
821,748 + -1.1
821,752 - -0.9
821,755 + -4.8
821,764 + 0.1
821,835 + -2.3
821,887 + -1.0
821,911 + -1.7
821,919 + -1.0
821,919 + -2.1
821,921 + -0.4
821,922 - -3.0
821,923 - -1.4
821,923 + -0.4
821,924 + -2.7
821,927 + -3.0
821,928 + -2.5
821,929 - -0.3
821,931 + -0.1
821,939 - 0.4
821,940 - -1.2
821,941 - -1.2
821,941 + -0.5
821,965 + -0.5
821,970 - -2.6
821,975 - -1.9
821,983 - -0.9
821,996 - -1.2
822,000 - -2.0
822,004 - -3.6
822,005 - -1.1
822,091 - 0.5
822,179 - -2.7
822,180 + -2.0
822,189 - -0.5
822,208 - -1.6
822,214 - -1.0
822,214 - -3.9
822,231 - -2.2
822,235 - -0.7
822,242 + -2.7
822,242 + -0.1
822,249 + -2.6
822,250 + -0.2
822,257 - -0.3
822,259 + -0.6
822,262 + -0.2
822,266 - -1.0
822,375 + -0.9
822,377 + -1.8