Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1271

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1270: 9638 - KOG0254 Predicted transporter (major facilitator superfamily), at 800593 to 802936 9638 mRNA_1271: 9639 - K05349 bglX beta-glucosidase, at 803420 to 806888 9639 mRNA_1272: 9640 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 807645 to 808575 9640

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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802,423 + 9638 mRNA_1270 0.78 -3.1
802,994 + 0.6
803,005 + -0.2
803,020 + -1.2
803,137 - -2.7
803,141 + -2.7
803,158 + -2.3
803,183 - -2.5
803,199 - -2.8
803,296 + -1.4
803,302 + -1.2
803,311 - -1.8
803,333 + -3.4
803,456 - -1.9
803,463 + -1.0
803,464 - -1.2
803,465 - -4.2
803,623 - -1.9
803,787 + 9639 mRNA_1271 0.11 -0.3
803,864 + 9639 mRNA_1271 0.13 -1.9
803,894 - 9639 mRNA_1271 0.14 -1.0
803,960 - 9639 mRNA_1271 0.16 -0.9
804,009 - 9639 mRNA_1271 0.17 1.0
804,049 + 9639 mRNA_1271 0.18 -2.4
804,067 + 9639 mRNA_1271 0.19 -1.2
804,188 + 9639 mRNA_1271 0.22 -1.8
804,473 + 9639 mRNA_1271 0.30 -1.5
804,613 + 9639 mRNA_1271 0.34 2.5
804,616 - 9639 mRNA_1271 0.34 -1.9
804,762 - 9639 mRNA_1271 0.39 0.2
804,794 - 9639 mRNA_1271 0.40 -2.8
804,864 + 9639 mRNA_1271 0.42 -0.5
804,979 - 9639 mRNA_1271 0.45 -0.5
805,215 + 9639 mRNA_1271 0.52 1.3
805,246 + 9639 mRNA_1271 0.53 -0.4
805,488 + 9639 mRNA_1271 0.60 -0.2
805,625 + 9639 mRNA_1271 0.64 0.9
805,652 + 9639 mRNA_1271 0.64 -0.8
805,802 + 9639 mRNA_1271 0.69 -1.6
805,805 - 9639 mRNA_1271 0.69 -1.3
805,968 + 9639 mRNA_1271 0.73 -1.7
806,102 - 9639 mRNA_1271 0.77 -0.9
806,252 - 9639 mRNA_1271 0.82 -0.4
806,327 + 9639 mRNA_1271 0.84 -1.6
806,464 + 9639 mRNA_1271 0.88 -3.0
806,547 - -2.4
806,674 + -0.6
806,676 - -3.1
806,830 + -1.8
807,271 + -0.8
807,273 - -0.7
807,294 - -1.2
807,296 - -1.1
807,300 + -2.3
807,300 + -0.3
807,388 + -1.0
807,399 + -4.8
807,412 - -2.1
807,425 + -3.2
807,545 - -1.7
807,663 + -3.1
807,706 - -1.4
807,714 - -1.3
807,864 + 9640 mRNA_1272 0.24 -1.8
807,870 + 9640 mRNA_1272 0.24 -1.5