Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1266

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1265: 9633 - K14861 URB1 nucleolar pre-ribosomal-associated protein 1, at 784543 to 790877 9633 mRNA_1266: 9634 - K00004 BDH, butB (R,R)-butanediol dehydrogenase / meso-butanediol dehydrogenase / diacetyl reductase, at 791102 to 792635 9634 mRNA_1267: 9635 - K00814 GPT, ALT alanine transaminase, at 793138 to 795041 9635

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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791,013 + -2.7
791,024 - 0.2
791,024 - -1.7
791,025 + -2.2
791,027 - -1.9
791,041 + -0.7
791,044 - -2.4
791,045 - -3.3
791,177 + -1.8
791,703 - 9634 mRNA_1266 0.39 -0.7
791,740 + 9634 mRNA_1266 0.42 -1.3
792,352 - 9634 mRNA_1266 0.81 -0.9
792,640 + 0.6
792,755 - 0.3
792,761 - -2.8
792,762 - -0.7
792,789 - -1.0
792,789 + -1.7
792,808 - -0.9
792,844 + -1.8
792,846 + -1.0
792,846 + -2.1
792,910 + -3.1
792,943 - -1.1
792,997 + -0.8
793,028 - 0.5
793,032 - -3.3
793,055 - -2.4
793,058 - -1.3
793,065 + -1.0
793,072 - -0.4
793,075 - -1.1
793,084 + -0.3
793,165 + -1.4
793,167 - -0.8
793,218 + -1.7
793,223 - -0.9
793,351 - 9635 mRNA_1267 0.11 -3.8
793,354 + 9635 mRNA_1267 0.11 -0.5
793,370 - 9635 mRNA_1267 0.12 0.0
793,373 + 9635 mRNA_1267 0.12 -2.1
793,500 - 9635 mRNA_1267 0.19 0.0
793,507 + 9635 mRNA_1267 0.19 -2.4
793,521 - 9635 mRNA_1267 0.20 -2.3