Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1259

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1258: 9626 - Hypothetical Protein, at 770373 to 771317 9626 mRNA_1259: 9627 - K10887 DCLRE1C, ARTEMIS, SCIDA DNA cross-link repair 1C protein, at 771743 to 774831 9627 mRNA_1260: 9628 - Hypothetical Protein, at 775033 to 777519 9628

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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771,447 + -1.0
771,577 - -2.4
771,584 + -2.1
771,587 + -0.8
771,719 + -2.3
772,016 + -2.4
772,145 + 9627 mRNA_1259 0.13 -1.1
772,343 + 9627 mRNA_1259 0.19 -1.6
772,345 - 9627 mRNA_1259 0.19 -0.0
772,704 + 9627 mRNA_1259 0.31 -1.8
772,740 - 9627 mRNA_1259 0.32 -0.8
772,994 - 9627 mRNA_1259 0.40 0.7
773,029 + 9627 mRNA_1259 0.42 0.3
773,246 - 9627 mRNA_1259 0.49 -1.8
773,318 - 9627 mRNA_1259 0.51 -0.8
773,451 + 9627 mRNA_1259 0.55 -0.3
773,588 - 9627 mRNA_1259 0.60 -1.3
773,717 - 9627 mRNA_1259 0.64 -0.2
773,774 - 9627 mRNA_1259 0.66 -2.5
773,829 - 9627 mRNA_1259 0.68 -3.0
773,833 + 9627 mRNA_1259 0.68 -0.4
774,079 + 9627 mRNA_1259 0.76 0.0
774,179 - 9627 mRNA_1259 0.79 -0.6
774,187 + 9627 mRNA_1259 0.79 -3.1
774,187 + 9627 mRNA_1259 0.79 -0.9
774,313 - 9627 mRNA_1259 0.83 -0.9
774,322 + 9627 mRNA_1259 0.83 -1.3
774,342 + 9627 mRNA_1259 0.84 -1.3
774,450 + 9627 mRNA_1259 0.88 -2.1
774,680 - -3.9
775,001 + -0.6
775,061 - -1.4
775,290 + 9628 mRNA_1260 0.10 -0.7
775,449 + 9628 mRNA_1260 0.17 -1.3
775,509 + 9628 mRNA_1260 0.19 -2.8
775,660 - 9628 mRNA_1260 0.25 -2.8
775,701 + 9628 mRNA_1260 0.27 -4.1
775,730 + 9628 mRNA_1260 0.28 -0.7