Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1253

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1252: 9620 - BLAST glycosyltransferase family 22 protein [Mixia osmu..., at 757595 to 759040 9620 mRNA_1253: 9621 - K04554 UBE2J2, NCUBE2, UBC6 ubiquitin-conjugating enzyme E2 J2, at 759440 to 760414 9621 mRNA_1254: 9622 - K02150 ATPeV1E, ATP6E V-type H+-transporting ATPase subunit E, at 761130 to 762354 9622

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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758,495 - 9620 mRNA_1252 0.62 0.1
758,536 + 9620 mRNA_1252 0.65 -1.3
758,673 + 9620 mRNA_1252 0.75 -2.1
758,800 + 9620 mRNA_1252 0.83 -1.2
758,820 - 9620 mRNA_1252 0.85 -2.1
758,971 + 0.3
759,249 - 1.4
759,266 + -2.7
759,273 - -1.8
759,302 - -2.8
759,303 + 0.3
759,303 + -3.8
759,416 - -2.3
759,562 - 9621 mRNA_1253 0.13 -1.5
759,567 + 9621 mRNA_1253 0.13 -1.9
759,653 - 9621 mRNA_1253 0.22 -3.0
759,842 + 9621 mRNA_1253 0.41 -1.5
760,233 + 9621 mRNA_1253 0.81 -2.0
760,402 + 1.0
760,405 - -0.0
760,550 + -2.1
760,557 - -0.1
760,688 - -2.0