Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1249

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1248: 9616 - KOG1289 Amino acid transporters, at 747049 to 750301 9616 mRNA_1249: 9617 - Hypothetical Protein, at 750828 to 752844 9617

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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749,881 + 9616 mRNA_1248 0.87 0.6
749,913 - 9616 mRNA_1248 0.88 -1.4
749,932 - 9616 mRNA_1248 0.89 0.1
749,933 + 9616 mRNA_1248 0.89 -0.6
750,023 - -3.0
750,056 - -0.9
750,125 - -2.1
750,154 - -2.9
750,158 - -1.7
750,184 - 1.7
750,204 - -1.7
750,213 - -0.5
750,217 - -1.8
750,220 + -1.0
750,226 - 0.5
750,328 - -3.4
750,469 + -0.8
750,496 - -1.5
750,506 + -0.0
750,559 + 0.1
750,570 + -3.2
750,660 + -0.7
750,690 + -0.7
750,824 + -0.8
750,838 - -1.3
751,275 + 9617 mRNA_1249 0.22 -3.5
751,532 + 9617 mRNA_1249 0.35 -1.4
751,536 - 9617 mRNA_1249 0.35 -2.4
751,690 + 9617 mRNA_1249 0.43 -0.5
752,394 + 9617 mRNA_1249 0.78 1.4
752,519 + 9617 mRNA_1249 0.84 -2.4
752,531 + 9617 mRNA_1249 0.84 -1.8
752,668 + -1.2
752,732 + 0.7
752,837 - -0.7
752,844 + 0.8
752,851 - -1.1
752,973 - -1.1
752,973 - -0.4
752,977 + -3.3
752,984 + -0.5
753,002 + -2.6
753,114 - -2.5
753,115 - -2.8
753,117 - -1.9
753,122 - -0.3
753,122 - -1.7
753,126 + -0.6
753,138 - -0.2
753,138 - -2.0
753,145 - -0.4
753,150 - -2.3
753,264 + -2.7
753,269 + -1.0
753,393 + -0.1
753,406 - -3.9
753,416 + -0.6
753,426 + -2.6
753,438 + -1.4
753,450 + -1.6
753,719 - -2.6