Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1244

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1243: 9611 - K02493 hemK, prmC, HEMK release factor glutamine methyltransferase, at 738287 to 739305 9611 mRNA_1244: 9612 - SUPERFAMILY--SSF52047, at 739687 to 741319 9612 mRNA_1245: 9613 - HMMPfam-Magnesium transporter NIPA-PF05653,SUPERFAMILY--SSF103481, at 741721 to 743435 9613

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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739,182 + 9611 mRNA_1243 0.88 -2.9
739,310 + -2.0
739,455 - -3.1
739,458 - -1.8
739,461 + -2.2
739,480 + -1.9
739,596 - -2.0
739,606 - -3.0
739,609 - -0.8
739,628 - -3.6
739,634 - -1.8
739,635 + -1.3
739,639 + -0.8
739,770 + -4.8
739,771 - -1.0
739,778 + -1.1
739,782 + -2.6
739,914 - 9612 mRNA_1244 0.14 -0.3
739,918 - 9612 mRNA_1244 0.14 -2.6
739,963 - 9612 mRNA_1244 0.17 -3.2
740,346 + 9612 mRNA_1244 0.40 -0.6
740,411 - 9612 mRNA_1244 0.44 -1.4
740,421 + 9612 mRNA_1244 0.45 -0.3
740,555 - 9612 mRNA_1244 0.53 -1.0
740,562 + 9612 mRNA_1244 0.54 -3.9
740,608 + 9612 mRNA_1244 0.56 -1.6
740,635 + 9612 mRNA_1244 0.58 -0.3
740,906 + 9612 mRNA_1244 0.75 0.4
741,093 - 9612 mRNA_1244 0.86 -2.9
741,258 + -1.8
741,354 + -0.6
741,529 + -2.6
741,636 - -2.5
741,654 - -1.5
741,660 - -0.1
741,948 - 9613 mRNA_1245 0.13 1.3