Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1241

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1240: 9608 - Interpro Protein of unknown function (DUF1275) 0, at 732640 to 733855 9608 mRNA_1241: 9609 - K12893 SFRS4_5_6 splicing factor, arginine/serine-rich 4/5/6, at 734372 to 735961 9609 mRNA_1242: 9610 - K01110 PTEN phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN, at 736191 to 738180 9610

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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733,468 + 9608 mRNA_1240 0.68 -0.8
733,597 + 9608 mRNA_1240 0.79 -3.2
733,644 + 9608 mRNA_1240 0.83 0.2
733,684 - 9608 mRNA_1240 0.86 -1.9
733,756 - -1.7
733,758 - -0.6
733,797 + -0.4
733,809 - -2.6
733,896 + -1.9
733,917 - 1.0
734,060 - -2.9
734,173 - -1.3
734,181 + -1.2
734,384 + -0.6
735,067 - 9609 mRNA_1241 0.44 -1.8
735,255 + 9609 mRNA_1241 0.56 -1.2
735,676 + 9609 mRNA_1241 0.82 -1.4
735,884 - -0.9
735,966 - -2.4
736,091 + -0.4
736,098 + -2.0
736,116 - -1.8
736,121 - -0.5
736,121 - -2.0
736,398 - 9610 mRNA_1242 0.10 -0.4
736,406 - 9610 mRNA_1242 0.11 -2.3
736,406 - 9610 mRNA_1242 0.11 -3.2
736,406 - 9610 mRNA_1242 0.11 -0.2
736,425 - 9610 mRNA_1242 0.12 0.3
736,433 + 9610 mRNA_1242 0.12 -1.9
736,713 - 9610 mRNA_1242 0.26 -0.8
736,846 - 9610 mRNA_1242 0.33 -0.6
736,954 - 9610 mRNA_1242 0.38 -1.0