Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1238

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1237: 9605 - SUPERFAMILY--SSF52047, at 724433 to 725551 9605 mRNA_1238: 9606 - SUPERFAMILY--SSF52047, at 726176 to 728961 9606 mRNA_1239: 9607 - KOG0032 Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily, at 729414 to 732263 9607

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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725,492 + -3.8
725,698 - -2.9
725,715 + -2.2
725,715 - -3.2
725,750 - 1.2
725,752 - 0.9
725,753 - -1.6
725,771 + -2.0
725,877 + -3.0
726,057 + -3.5
726,077 - -2.5
726,206 - -0.4
726,208 - -2.5
726,218 - -2.2
726,345 - -1.9
726,386 + -1.7
726,406 - 2.0
726,859 - 9606 mRNA_1238 0.25 -1.9
726,936 - 9606 mRNA_1238 0.27 -1.2
726,939 + 9606 mRNA_1238 0.27 -1.8
727,084 - 9606 mRNA_1238 0.33 -0.9
727,183 - 9606 mRNA_1238 0.36 -1.5
727,214 + 9606 mRNA_1238 0.37 -1.7
727,237 + 9606 mRNA_1238 0.38 -3.0
727,320 - 9606 mRNA_1238 0.41 -1.7
727,322 + 9606 mRNA_1238 0.41 -2.5
727,517 + 9606 mRNA_1238 0.48 -1.4
727,634 + 9606 mRNA_1238 0.52 -0.3
727,778 + 9606 mRNA_1238 0.58 -3.5
727,942 + 9606 mRNA_1238 0.63 -2.3
728,378 + 9606 mRNA_1238 0.79 -2.5
728,517 + 9606 mRNA_1238 0.84 -2.9
728,618 - 9606 mRNA_1238 0.88 -3.4
728,645 - 9606 mRNA_1238 0.89 -1.5
728,645 + 9606 mRNA_1238 0.89 -1.7
728,807 + 0.8
729,355 - -1.9
729,365 - 0.1
729,370 - -3.1
729,387 + 0.6
729,815 - 9607 mRNA_1239 0.14 -1.5
729,819 - 9607 mRNA_1239 0.14 -1.1
729,832 + 9607 mRNA_1239 0.15 -2.1