Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1228

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1227: 9595 - KOG1318 Helix loop helix transcription factor EB, at 696629 to 699042 9595 mRNA_1228: 9596 - K00693 GYS glycogen synthase, at 699587 to 703104 9596 mRNA_1229: 9597 - SUPERFAMILY--SSF52047, at 703452 to 704884 9597

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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699,044 - -0.0
699,135 + -0.4
699,138 + -1.4
699,169 + 0.9
699,250 - -1.3
699,253 - -0.1
699,262 + -1.5
699,263 + -1.3
699,263 - -0.9
699,278 + -1.2
699,326 - -1.9
699,346 + -0.1
699,356 - -0.4
699,358 - 1.4
699,368 - -2.6
699,377 + -2.2
699,379 + -0.8
699,389 - -1.2
699,409 - -0.8
699,409 + -0.6
699,423 - -0.1
699,423 - 2.1
699,425 - -2.7
699,432 - -0.4
699,449 - -0.1
699,473 + -0.8
699,475 + -0.7
699,476 - -0.8
699,487 + -0.7
699,487 - 1.4
699,502 + -0.5
699,504 + -2.5
699,519 - 2.2
699,520 - -0.3
699,531 - -0.3
699,533 - -0.2
699,534 + 0.5
699,669 + -1.2
699,671 + -0.8
699,677 + -1.0
699,684 + -2.9
699,691 + -0.0
699,698 + -3.1
699,828 + -3.2
699,831 - -2.7
699,831 - -2.6
699,834 - -0.4
700,568 + 9596 mRNA_1228 0.28 -2.0
700,722 - 9596 mRNA_1228 0.32 -1.4
701,166 + 9596 mRNA_1228 0.45 -2.3
701,288 - 9596 mRNA_1228 0.48 -2.5
701,323 - 9596 mRNA_1228 0.49 -1.4
701,829 - 9596 mRNA_1228 0.64 -0.7
702,187 - 9596 mRNA_1228 0.74 -3.0
702,191 + 9596 mRNA_1228 0.74 -1.5
702,200 - 9596 mRNA_1228 0.74 -1.1
702,207 - 9596 mRNA_1228 0.74 -3.3
702,209 + 9596 mRNA_1228 0.75 -4.0
702,763 - -1.2
702,787 + -1.6
703,072 - 1.1
703,125 - -0.6
703,323 + -4.4
703,326 - -3.4
703,650 - 9597 mRNA_1229 0.14 -0.9
704,070 + 9597 mRNA_1229 0.43 -0.1