Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1223

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1222: 9590 - BLAST proteophosphoglycan ppg4 [Moniliophthora roreri M..., at 682421 to 686506 9590 mRNA_1223: 9591 - PRINTS-Proline rich extensin signature-PR01217, at 687384 to 689890 9591 mRNA_1224: 9592 - BLAST catalytic [Ascochyta rabiei], at 690092 to 691295 9592

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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686,610 - -0.9
686,681 - -3.8
686,734 + -1.7
686,767 + 0.5
686,790 + -0.3
686,826 - 1.2
686,843 - -1.3
686,880 - -3.5
686,885 - -3.1
686,887 - -2.1
686,889 + -1.0
686,900 + -0.9
686,917 + -2.4
686,923 + -1.4
686,954 + 0.1
686,964 - -1.0
686,988 - -0.3
686,988 - -2.9
687,015 - -2.0
687,018 + 1.1
687,029 + -1.9
687,033 + 0.3
687,043 - -2.7
687,046 + -1.3
687,052 + -0.5
687,061 + -0.3
687,064 - -1.1
687,186 - 0.8
687,192 - -2.3
687,214 + -0.3
687,363 + -4.1
687,497 + -0.2
687,639 + 9591 mRNA_1223 0.10 -1.8
687,767 + 9591 mRNA_1223 0.15 -2.1
688,125 + 9591 mRNA_1223 0.30 -1.2
688,156 - 9591 mRNA_1223 0.31 -2.5
688,341 + 9591 mRNA_1223 0.38 -2.3
688,501 + 9591 mRNA_1223 0.45 -3.2
688,908 - 9591 mRNA_1223 0.61 0.1
689,086 + 9591 mRNA_1223 0.68 -1.3
689,807 + -0.7
689,863 - -0.5
689,959 + -2.4
689,968 + -0.8
689,968 - -1.1
689,972 + -1.4
690,032 + -0.2
690,045 + -1.1
690,189 + -1.2
690,304 + 9592 mRNA_1224 0.18 -1.0
690,320 + 9592 mRNA_1224 0.19 0.0
690,324 + 9592 mRNA_1224 0.19 1.4
690,457 + 9592 mRNA_1224 0.30 -1.6
690,466 - 9592 mRNA_1224 0.31 -1.0
690,594 - 9592 mRNA_1224 0.42 -2.2
690,760 - 9592 mRNA_1224 0.55 -3.5