Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1222

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1221: 9589 - K01810 GPI, pgi glucose-6-phosphate isomerase, at 679841 to 682126 9589 mRNA_1222: 9590 - BLAST proteophosphoglycan ppg4 [Moniliophthora roreri M..., at 682421 to 686506 9590 mRNA_1223: 9591 - PRINTS-Proline rich extensin signature-PR01217, at 687384 to 689890 9591

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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682,145 + -1.2
682,446 + -2.1
682,646 + -0.9
682,646 - -1.9
683,192 + 9590 mRNA_1222 0.19 -1.2
683,418 + 9590 mRNA_1222 0.24 0.6
683,461 - 9590 mRNA_1222 0.25 -2.0
683,470 - 9590 mRNA_1222 0.26 -0.1
683,563 - 9590 mRNA_1222 0.28 -0.7
683,586 - 9590 mRNA_1222 0.29 -2.0
683,599 + 9590 mRNA_1222 0.29 -1.1
683,719 - 9590 mRNA_1222 0.32 -2.3
683,891 - 9590 mRNA_1222 0.36 -3.5
683,992 + 9590 mRNA_1222 0.38 -0.7
684,002 - 9590 mRNA_1222 0.39 -2.0
684,713 + 9590 mRNA_1222 0.56 -1.6
684,819 - 9590 mRNA_1222 0.59 -0.3
685,003 + 9590 mRNA_1222 0.63 -1.4
685,052 - 9590 mRNA_1222 0.64 -2.6
685,272 + 9590 mRNA_1222 0.70 -1.8
685,604 + 9590 mRNA_1222 0.78 -3.0
685,708 + 9590 mRNA_1222 0.80 0.9
685,864 + 9590 mRNA_1222 0.84 -4.8
685,905 - 9590 mRNA_1222 0.85 -0.9
686,167 + -2.5
686,169 - -1.3
686,211 - -1.8
686,294 - -3.4
686,610 - -0.9
686,681 - -3.8
686,734 + -1.7
686,767 + 0.5
686,790 + -0.3
686,826 - 1.2
686,843 - -1.3
686,880 - -3.5
686,885 - -3.1
686,887 - -2.1
686,889 + -1.0
686,900 + -0.9
686,917 + -2.4
686,923 + -1.4
686,954 + 0.1
686,964 - -1.0
686,988 - -0.3
686,988 - -2.9
687,015 - -2.0
687,018 + 1.1
687,029 + -1.9
687,033 + 0.3
687,043 - -2.7
687,046 + -1.3
687,052 + -0.5
687,061 + -0.3
687,064 - -1.1
687,186 - 0.8
687,192 - -2.3
687,214 + -0.3
687,363 + -4.1
687,497 + -0.2