Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1218

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1217: 9585 - K10580 UBE2N, BLU, UBC13 ubiquitin-conjugating enzyme E2 N, at 672006 to 672875 9585 mRNA_1218: 9586 - SUPERFAMILY--SSF52047, at 673379 to 675043 9586 mRNA_1219: 9587 - KOG3202 SNARE protein TLG1/Syntaxin 6, at 675233 to 676117 9587

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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672,446 + 9585 mRNA_1217 0.51 -3.3
672,625 + 9585 mRNA_1217 0.71 -1.3
672,649 - 9585 mRNA_1217 0.74 -2.6
672,749 + 9585 mRNA_1217 0.85 -1.1
672,755 + 9585 mRNA_1217 0.86 -0.1
673,063 - -0.8
673,063 + -0.6
673,080 - -1.5
673,233 + -3.5
673,235 + -1.5
673,268 - 0.5
673,404 - 0.1
673,462 + -1.0
673,875 - 9586 mRNA_1218 0.30 0.4
673,999 - 9586 mRNA_1218 0.37 -2.3
674,006 + 9586 mRNA_1218 0.38 -3.8
674,848 - 9586 mRNA_1218 0.88 -0.4
674,994 - -2.3