Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1200

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1199: 9567 - K02325 POLE2 DNA polymerase epsilon subunit 2, at 634120 to 636519 9567 mRNA_1200: 9568 - KOG3132 m3G-cap-specific nuclear import receptor (Snurportin1), at 636732 to 638216 9568 mRNA_1201: 9569 - K12625 LSM6 U6 snRNA-associated Sm-like protein LSm6, at 638418 to 638898 9569

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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636,668 - -0.9
636,680 - -2.5
636,955 + 9568 mRNA_1200 0.15 -1.2
637,313 - 9568 mRNA_1200 0.39 -2.3
637,341 - 9568 mRNA_1200 0.41 -1.9
637,499 - 9568 mRNA_1200 0.52 -1.3
637,668 - 9568 mRNA_1200 0.63 -3.1
637,693 + 9568 mRNA_1200 0.65 -2.0
637,696 - 9568 mRNA_1200 0.65 0.3
638,006 - 9568 mRNA_1200 0.86 -1.8
638,166 + -1.8
638,193 - 0.3
639,063 - -0.9