Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1194

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1193: 9561 - KOG2504 Monocarboxylate transporter, at 618729 to 620711 9561 mRNA_1194: 9562 - K05925 METTL3_14 mRNA (2'-O-methyladenosine-N6-)-methyltransferase, at 621153 to 623607 9562 mRNA_1195: 9563 - K03248 EIF3G translation initiation factor 3 subunit G, at 624077 to 625434 9563

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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620,167 - 9561 mRNA_1193 0.73 0.4
620,190 + 9561 mRNA_1193 0.74 -1.9
620,190 + 9561 mRNA_1193 0.74 -0.8
620,191 - 9561 mRNA_1193 0.74 -2.4
620,254 - 9561 mRNA_1193 0.77 -1.2
620,450 - 9561 mRNA_1193 0.87 -3.5
620,542 + -2.0
620,584 - 0.8
620,724 - -1.4
620,875 + 0.5
620,885 + -2.4
621,036 + 0.4
621,055 - 0.3
621,057 + -1.5
621,163 - -1.2
621,192 + -1.2
621,305 + -0.9
621,397 + -1.2
621,398 + -2.4
621,695 - 9562 mRNA_1194 0.22 -3.8
621,735 + 9562 mRNA_1194 0.24 -0.4
621,745 + 9562 mRNA_1194 0.24 -2.9
621,749 + 9562 mRNA_1194 0.24 1.5
621,781 + 9562 mRNA_1194 0.26 0.2
621,788 + 9562 mRNA_1194 0.26 -1.3
621,907 - 9562 mRNA_1194 0.31 -1.0
621,984 - 9562 mRNA_1194 0.34 -0.2
621,984 - 9562 mRNA_1194 0.34 -0.7
622,015 + 9562 mRNA_1194 0.35 -1.5
622,048 - 9562 mRNA_1194 0.36 -1.4
622,497 + 9562 mRNA_1194 0.55 -0.1
622,564 - 9562 mRNA_1194 0.57 -2.9
622,598 - 9562 mRNA_1194 0.59 -0.4
622,789 - 9562 mRNA_1194 0.67 -1.9
622,792 + 9562 mRNA_1194 0.67 -1.2
622,933 + 9562 mRNA_1194 0.73 -0.9
623,205 - 9562 mRNA_1194 0.84 -2.5
623,211 - 9562 mRNA_1194 0.84 -1.0
623,643 - -1.7
623,644 - -2.1
623,647 - -1.8
623,672 + -1.3
623,791 + -0.6
623,851 + -1.8
623,854 + 0.5
624,089 - -0.1