Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1191

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1190: 9558 - K05747 WAS Wiskott-Aldrich syndrome protein, at 613058 to 614661 9558 mRNA_1191: 9559 - KOG3033 Predicted PhzC/PhzF-type epimerase, at 615062 to 616261 9559 mRNA_1192: 9560 - KOG2504 Monocarboxylate transporter, at 616392 to 618414 9560

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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614,552 - -2.8
614,577 + -3.1
614,713 - -1.6
614,740 - 0.7
614,964 - -2.1
614,974 + -2.2
614,990 + -1.1
614,991 - -1.5
614,995 + -0.8
615,125 - -3.2
615,138 - -1.6
615,149 + -1.0
615,152 - -0.4
615,377 + 9559 mRNA_1191 0.26 -1.4
615,405 - 9559 mRNA_1191 0.29 -0.6
615,405 - 9559 mRNA_1191 0.29 -1.2
615,409 - 9559 mRNA_1191 0.29 0.5
615,486 + 9559 mRNA_1191 0.35 -2.0
615,577 - 9559 mRNA_1191 0.43 -2.0
615,708 - 9559 mRNA_1191 0.54 -1.7
615,718 + 9559 mRNA_1191 0.55 -0.8
615,754 + 9559 mRNA_1191 0.58 -4.7
616,021 - 9559 mRNA_1191 0.80 -2.6
616,056 - 9559 mRNA_1191 0.83 -3.0
616,129 - 9559 mRNA_1191 0.89 -3.5
616,130 + 9559 mRNA_1191 0.89 -1.0
616,130 + 9559 mRNA_1191 0.89 -0.6
616,144 - -1.4
616,153 + 0.4
616,283 + -3.1
616,305 - -1.4
616,405 + -1.7
616,597 - 9560 mRNA_1192 0.10 -2.3
616,608 + 9560 mRNA_1192 0.11 -1.3
616,618 + 9560 mRNA_1192 0.11 -1.0
616,730 + 9560 mRNA_1192 0.17 -0.0
616,731 + 9560 mRNA_1192 0.17 -0.5
616,735 + 9560 mRNA_1192 0.17 -1.5
616,844 - 9560 mRNA_1192 0.22 -1.2
616,888 - 9560 mRNA_1192 0.25 -1.5
616,898 + 9560 mRNA_1192 0.25 -1.8
616,992 - 9560 mRNA_1192 0.30 -1.2
617,014 - 9560 mRNA_1192 0.31 -1.2
617,171 + 9560 mRNA_1192 0.39 -0.4