Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1185

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1184: 9552 - KOG0143 Iron/ascorbate family oxidoreductases, at 599340 to 600971 9552 mRNA_1185: 9553 - KOG1399 Flavin-containing monooxygenase, at 601404 to 603765 9553 mRNA_1186: 9554 - K20410 MAPKAP1, SIN1 target of rapamycin complex 2 subunit MAPKAP1, at 603862 to 607168 9554

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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600,433 + 9552 mRNA_1184 0.67 -0.2
600,561 - 9552 mRNA_1184 0.75 -0.2
600,741 - 9552 mRNA_1184 0.86 -0.8
600,893 + -2.9
601,052 - -0.3
601,147 - -2.7
601,176 + -1.0
601,177 + -3.7
601,186 + 0.1
601,197 - -2.2
601,204 + -2.9
601,205 + -1.2
601,211 - -1.7
601,217 - -0.5
601,359 + -2.6
601,502 - -2.0
601,519 + -2.8
601,610 - 0.4
601,705 - 9553 mRNA_1185 0.13 -2.0
601,792 + 9553 mRNA_1185 0.16 -0.9
601,840 + 9553 mRNA_1185 0.18 -2.5
601,917 - 9553 mRNA_1185 0.22 -1.8
602,125 + 9553 mRNA_1185 0.31 -2.1
602,184 - 9553 mRNA_1185 0.33 -0.2
602,221 - 9553 mRNA_1185 0.35 0.1
602,226 - 9553 mRNA_1185 0.35 -1.2
602,531 - 9553 mRNA_1185 0.48 -2.4
602,718 + 9553 mRNA_1185 0.56 -1.8
602,908 + 9553 mRNA_1185 0.64 -2.5
602,911 - 9553 mRNA_1185 0.64 -1.7
602,920 - 9553 mRNA_1185 0.64 -3.8
602,979 - 9553 mRNA_1185 0.67 -0.6
602,989 + 9553 mRNA_1185 0.67 -3.7
603,066 + 9553 mRNA_1185 0.70 -2.1
603,262 - 9553 mRNA_1185 0.79 -1.0
603,282 - 9553 mRNA_1185 0.80 1.2
603,283 - 9553 mRNA_1185 0.80 -1.5
603,283 - 9553 mRNA_1185 0.80 0.2
603,304 + 9553 mRNA_1185 0.80 -0.4
603,414 - 9553 mRNA_1185 0.85 0.6
603,426 - 9553 mRNA_1185 0.86 -1.5
603,526 - 9553 mRNA_1185 0.90 -2.7
603,565 - -0.6
603,697 - -0.4
603,752 + -4.4
604,074 + -0.7
604,101 - 0.4
604,351 + 9554 mRNA_1186 0.15 -0.0
604,465 - 9554 mRNA_1186 0.18 -2.1