Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1184

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1183: 9551 - KOG2533 Permease of the major facilitator superfamily, at 596710 to 598781 9551 mRNA_1184: 9552 - KOG0143 Iron/ascorbate family oxidoreductases, at 599340 to 600971 9552 mRNA_1185: 9553 - KOG1399 Flavin-containing monooxygenase, at 601404 to 603765 9553

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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598,381 + 9551 mRNA_1183 0.81 -2.2
598,422 + 9551 mRNA_1183 0.83 -1.3
598,658 - 0.7
598,663 + -2.4
598,679 - -0.7
598,705 + -1.6
598,802 - -2.1
598,831 + -0.6
598,963 - -1.4
598,965 - -1.5
598,969 - -0.9
598,970 + -0.6
598,978 + -1.7
598,983 + -1.9
598,985 + 0.0
599,000 - -0.7
599,002 - -3.4
599,004 - -3.1
599,012 + -1.1
599,149 - -1.7
599,181 + -0.1
599,295 + -0.7
599,298 - -1.4
599,299 - -2.9
599,314 + 0.1
599,410 + -0.0
599,455 - -0.9
599,997 + 9552 mRNA_1184 0.40 -2.4
600,037 + 9552 mRNA_1184 0.43 -3.2
600,069 - 9552 mRNA_1184 0.45 1.3
600,078 + 9552 mRNA_1184 0.45 -1.0
600,145 - 9552 mRNA_1184 0.49 0.0
600,280 - 9552 mRNA_1184 0.58 -0.7
600,348 - 9552 mRNA_1184 0.62 -1.2
600,433 + 9552 mRNA_1184 0.67 -0.2
600,561 - 9552 mRNA_1184 0.75 -0.2
600,741 - 9552 mRNA_1184 0.86 -0.8
600,893 + -2.9
601,052 - -0.3
601,147 - -2.7
601,176 + -1.0
601,177 + -3.7
601,186 + 0.1
601,197 - -2.2
601,204 + -2.9
601,205 + -1.2
601,211 - -1.7
601,217 - -0.5
601,359 + -2.6
601,502 - -2.0
601,519 + -2.8
601,610 - 0.4
601,705 - 9553 mRNA_1185 0.13 -2.0
601,792 + 9553 mRNA_1185 0.16 -0.9
601,840 + 9553 mRNA_1185 0.18 -2.5
601,917 - 9553 mRNA_1185 0.22 -1.8