Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1172

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1171: 9539 - K07277 SAM50, TOB55, bamA outer membrane protein insertion porin family, at 568552 to 570961 9539 mRNA_1172: 9540 - KOG2277 S-M checkpoint control protein CID1 and related nucleotidyltransferases, at 571334 to 573898 9540 mRNA_1173: 9541 - Hypothetical Protein, at 574105 to 575221 9541

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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571,045 + -2.4
571,064 - -0.0
571,131 - -3.6
571,134 + -2.1
571,164 - -2.5
571,168 - -0.3
571,170 + -0.5
571,174 + -1.6
571,202 - -0.6
571,311 + -0.9
571,322 - -3.7
571,621 + 9540 mRNA_1172 0.11 -2.2
571,646 + 9540 mRNA_1172 0.12 -0.5
571,931 - 9540 mRNA_1172 0.23 -5.1
571,932 + 9540 mRNA_1172 0.23 -2.2
571,934 - 9540 mRNA_1172 0.23 -3.7
572,227 - 9540 mRNA_1172 0.35 -3.2
572,372 - 9540 mRNA_1172 0.40 -1.8
572,377 + 9540 mRNA_1172 0.41 -1.6
572,509 + 9540 mRNA_1172 0.46 -1.8
572,517 - 9540 mRNA_1172 0.46 -2.6
572,692 + 9540 mRNA_1172 0.53 -1.0
573,206 + 9540 mRNA_1172 0.73 0.4
573,262 - 9540 mRNA_1172 0.75 -2.7
573,325 - 9540 mRNA_1172 0.78 -0.6
573,385 + 9540 mRNA_1172 0.80 -1.1
573,502 + 9540 mRNA_1172 0.85 -2.2
573,546 + 9540 mRNA_1172 0.86 -1.8
573,865 + 3.6
573,919 + -0.6
573,927 + -0.2
573,929 - -2.1
574,023 + -2.2
574,242 + 9541 mRNA_1173 0.12 -3.5
574,256 - 9541 mRNA_1173 0.14 -0.2
574,303 + 9541 mRNA_1173 0.18 -0.8
574,314 - 9541 mRNA_1173 0.19 -2.9
574,406 + 9541 mRNA_1173 0.27 -0.9
574,457 - 9541 mRNA_1173 0.32 -1.0
574,465 + 9541 mRNA_1173 0.32 0.3
574,482 + 9541 mRNA_1173 0.34 -1.6
574,491 - 9541 mRNA_1173 0.35 -3.9
574,541 - 9541 mRNA_1173 0.39 -1.4
574,594 + 9541 mRNA_1173 0.44 -0.0
574,616 - 9541 mRNA_1173 0.46 -0.6
574,643 - 9541 mRNA_1173 0.48 -0.2
574,652 + 9541 mRNA_1173 0.49 -1.3
574,656 + 9541 mRNA_1173 0.49 -0.4
574,673 - 9541 mRNA_1173 0.51 -0.8
574,816 + 9541 mRNA_1173 0.64 -0.9
574,822 + 9541 mRNA_1173 0.64 -1.1
574,822 + 9541 mRNA_1173 0.64 -0.9
574,834 + 9541 mRNA_1173 0.65 -2.2
574,854 - 9541 mRNA_1173 0.67 0.9