Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1169

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1168: 9536 - K01474 hyuB N-methylhydantoinase B, at 560884 to 563023 9536 mRNA_1169: 9537 - K01469 OPLAH, OXP1, oplAH 5-oxoprolinase (ATP-hydrolysing), at 563547 to 566148 9537 mRNA_1170: 9538 - K09531 DNAJC11 DnaJ homolog subfamily C member 11, at 566177 to 568431 9538

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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562,866 + -2.3
563,010 - -2.9
563,014 - -2.6
563,096 - -0.7
563,177 - -1.7
563,177 + -0.9
563,177 + -1.8
563,218 + -1.2
563,341 - -0.0
563,351 + -0.6
563,352 + -3.2
563,401 - -2.1
563,404 - -0.2
563,429 - -1.3
563,456 - -2.9
563,678 - -3.4
563,683 + -1.4
563,829 + 9537 mRNA_1169 0.11 -3.5
564,106 - 9537 mRNA_1169 0.21 -0.9
564,150 + 9537 mRNA_1169 0.23 -1.7
564,178 - 9537 mRNA_1169 0.24 -2.8
564,287 + 9537 mRNA_1169 0.28 -3.5
564,317 + 9537 mRNA_1169 0.30 -1.2
565,000 - 9537 mRNA_1169 0.56 -2.6
565,014 + 9537 mRNA_1169 0.56 -1.0
565,022 - 9537 mRNA_1169 0.57 -2.3
565,447 - 9537 mRNA_1169 0.73 -1.8
565,545 - 9537 mRNA_1169 0.77 -2.2
565,559 + 9537 mRNA_1169 0.77 -0.1
565,585 - 9537 mRNA_1169 0.78 -0.6
565,744 - 9537 mRNA_1169 0.84 -0.7
565,748 - 9537 mRNA_1169 0.85 0.6
565,859 - 9537 mRNA_1169 0.89 -0.9
565,946 + 0.9
565,979 + 0.1
566,199 + -1.2
566,238 - -3.0
566,256 - -0.6
566,490 + 9538 mRNA_1170 0.14 0.0
566,574 + 9538 mRNA_1170 0.18 -1.0
566,936 + 9538 mRNA_1170 0.34 -2.2