Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1168

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1167: 9535 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 557587 to 560660 9535 mRNA_1168: 9536 - K01474 hyuB N-methylhydantoinase B, at 560884 to 563023 9536 mRNA_1169: 9537 - K01469 OPLAH, OXP1, oplAH 5-oxoprolinase (ATP-hydrolysing), at 563547 to 566148 9537

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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560,200 - 9535 mRNA_1167 0.85 -2.8
560,288 - 9535 mRNA_1167 0.88 -1.7
560,749 + -3.3
560,755 - 2.7
560,765 + -3.8
560,765 + -0.5
560,908 + 0.0
560,978 - -1.4
561,268 + 9536 mRNA_1168 0.18 0.4
561,406 - 9536 mRNA_1168 0.24 -1.8
561,422 + 9536 mRNA_1168 0.25 -2.7
561,437 - 9536 mRNA_1168 0.26 -0.8
561,464 - 9536 mRNA_1168 0.27 -0.8
561,482 - 9536 mRNA_1168 0.28 -2.7
561,697 - 9536 mRNA_1168 0.38 -1.1
561,903 + 9536 mRNA_1168 0.48 -3.1
562,866 + -2.3
563,010 - -2.9
563,014 - -2.6
563,096 - -0.7
563,177 - -1.7
563,177 + -0.9
563,177 + -1.8
563,218 + -1.2
563,341 - -0.0
563,351 + -0.6
563,352 + -3.2
563,401 - -2.1
563,404 - -0.2
563,429 - -1.3
563,456 - -2.9
563,678 - -3.4
563,683 + -1.4
563,829 + 9537 mRNA_1169 0.11 -3.5