Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1165

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1164: 9532 - Hypothetical Protein, at 552710 to 552960 9532 mRNA_1165: 9533 - HMMPfam-Protein of unknown function (DUF1445)-PF07286,PIRSF--PIRSF029755,SUPERFAMILY--SSF160920, at 553391 to 554372 9533 mRNA_1166: 9534 - KOG2533 Permease of the major facilitator superfamily, at 554788 to 557060 9534

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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552,650 + -0.8
552,697 - -0.3
552,701 + -1.0
552,761 + 9532 mRNA_1164 0.20 -0.0
552,777 - 9532 mRNA_1164 0.27 -1.2
552,788 - 9532 mRNA_1164 0.31 -0.8
552,789 - 9532 mRNA_1164 0.31 -1.8
552,824 + 9532 mRNA_1164 0.45 -1.0
552,848 - 9532 mRNA_1164 0.55 -0.4
552,853 + 9532 mRNA_1164 0.57 1.6
553,116 - -1.9
553,137 - -2.1
553,157 + -2.7
553,161 + 0.9
553,270 + -0.7
553,272 - -2.4
553,435 - 1.3
553,528 - 9533 mRNA_1165 0.14 0.5
553,595 - 9533 mRNA_1165 0.21 -1.7
553,726 + 9533 mRNA_1165 0.34 -2.0
553,732 - 9533 mRNA_1165 0.35 -2.2
554,014 - 9533 mRNA_1165 0.63 -2.5
554,023 - 9533 mRNA_1165 0.64 -0.9
554,278 - -2.6
554,286 + -1.5
554,351 + -1.4
554,544 + -2.1
554,563 - -2.8
554,625 - -1.9
554,710 - -2.0
555,124 + 9534 mRNA_1166 0.15 0.2
555,178 + 9534 mRNA_1166 0.17 -3.7
555,341 + 9534 mRNA_1166 0.24 -0.7
555,344 - 9534 mRNA_1166 0.24 -1.5