Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1143

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1142: 9510 - K03139 TFIIF2, GTF2F2, TFG2 transcription initiation factor TFIIF subunit beta, at 503587 to 505304 9510 mRNA_1143: 9511 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 505667 to 510461 9511 mRNA_1144: 9512 - K13355 NUDT19 nucleoside diphosphate-linked moiety X motif 19, mitochondrial, at 510566 to 511961 9512

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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505,332 - 0.0
505,339 + -0.8
505,461 - -1.2
505,485 + -1.2
505,576 + -4.4
505,585 - -4.0
505,596 + -0.5
505,598 - -2.6
505,602 + -2.1
505,604 + -1.4
505,605 + 0.4
505,749 - -2.4
505,902 + -3.5
506,038 - -0.4
506,213 + 9511 mRNA_1143 0.11 -1.6
506,310 - 9511 mRNA_1143 0.13 -1.8
506,351 + 9511 mRNA_1143 0.14 -0.9
506,473 + 9511 mRNA_1143 0.17 -2.5
506,628 - 9511 mRNA_1143 0.20 3.0
506,838 + 9511 mRNA_1143 0.24 -1.4
506,878 + 9511 mRNA_1143 0.25 -0.5
506,880 - 9511 mRNA_1143 0.25 -0.5
507,192 + 9511 mRNA_1143 0.32 -2.1
507,472 + 9511 mRNA_1143 0.38 -2.6
507,612 + 9511 mRNA_1143 0.41 -3.4
507,617 + 9511 mRNA_1143 0.41 0.7
507,629 + 9511 mRNA_1143 0.41 -1.2
508,168 - 9511 mRNA_1143 0.52 -2.3
508,275 + 9511 mRNA_1143 0.54 -0.8
508,368 + 9511 mRNA_1143 0.56 -2.0
508,441 + 9511 mRNA_1143 0.58 0.1
508,581 + 9511 mRNA_1143 0.61 0.5
508,782 + 9511 mRNA_1143 0.65 -2.3
508,817 + 9511 mRNA_1143 0.66 -0.1
508,817 + 9511 mRNA_1143 0.66 -3.2
509,107 - 9511 mRNA_1143 0.72 -0.4
509,235 + 9511 mRNA_1143 0.74 1.8
509,272 - 9511 mRNA_1143 0.75 -0.6
509,425 - 9511 mRNA_1143 0.78 -2.1
510,078 + 0.6
510,135 + -3.0
510,302 - -1.6
510,587 - -1.9
510,591 + -1.0
510,717 + 9512 mRNA_1144 0.11 -2.1
510,728 - 9512 mRNA_1144 0.12 -2.1
510,733 + 9512 mRNA_1144 0.12 -3.9
511,071 - 9512 mRNA_1144 0.36 -2.1