Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1130

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1129: 9497 - K12391 AP1G1 AP-1 complex subunit gamma-1, at 476023 to 479289 9497 mRNA_1130: 9498 - KOG1773 Stress responsive protein, at 479991 to 480650 9498 mRNA_1131: 9499 - K01758 CTH cystathionine gamma-lyase, at 480949 to 482653 9499

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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479,372 - -1.9
479,375 - -1.7
479,378 - -0.0
479,381 + -2.9
479,400 - -4.0
479,402 + -1.6
479,402 - -0.2
479,671 - -0.9
479,678 + 0.0
479,703 + -1.0
479,780 + -1.2
479,806 - -0.6
479,979 - -0.7
480,237 - 9498 mRNA_1130 0.37 -2.5
480,607 - 0.4
480,679 - -2.3
480,707 - -2.5
480,711 + -0.6
480,715 + -2.6
480,734 - -1.7
480,921 - 0.7