Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1128

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1127: 9495 - K00143 LYS2 L-aminoadipate-semialdehyde dehydrogenase, at 466494 to 471179 9495 mRNA_1128: 9496 - Interpro Arrestin (or S-antigen), N-terminal domain 0, at 471353 to 475855 9496 mRNA_1129: 9497 - K12391 AP1G1 AP-1 complex subunit gamma-1, at 476023 to 479289 9497

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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470,633 - 9495 mRNA_1127 0.88 -2.3
470,676 + 9495 mRNA_1127 0.89 -1.6
470,689 + 9495 mRNA_1127 0.90 -0.4
470,770 - -0.2
470,934 + -0.6
471,228 - -2.4
471,231 + -0.3
471,233 - 0.4
471,234 - -3.0
471,240 - -0.6
471,253 + -3.4
471,384 - -0.8
471,409 - -0.6
471,421 + -1.0
471,535 + -0.6
471,569 - -2.5
471,588 + 0.7
471,588 + -0.5
471,599 + 0.2
471,601 - -0.8
471,731 - -2.0
471,844 - 9496 mRNA_1128 0.11 -1.8
471,912 - 9496 mRNA_1128 0.12 -2.2
472,262 + 9496 mRNA_1128 0.20 -1.5
472,278 - 9496 mRNA_1128 0.21 -0.7
472,499 - 9496 mRNA_1128 0.25 -0.7
472,563 + 9496 mRNA_1128 0.27 -2.6
472,616 + 9496 mRNA_1128 0.28 -3.4
472,774 + 9496 mRNA_1128 0.32 0.1
472,933 + 9496 mRNA_1128 0.35 -2.2
473,215 - 9496 mRNA_1128 0.41 0.2
473,234 + 9496 mRNA_1128 0.42 -2.4
473,466 - 9496 mRNA_1128 0.47 -4.0
473,572 + 9496 mRNA_1128 0.49 -1.2
473,931 - 9496 mRNA_1128 0.57 -1.7
473,948 + 9496 mRNA_1128 0.58 -1.1
474,227 + 9496 mRNA_1128 0.64 -2.0
474,243 - 9496 mRNA_1128 0.64 -2.0
474,244 - 9496 mRNA_1128 0.64 1.3
474,949 + 9496 mRNA_1128 0.80 -1.2
475,057 + 9496 mRNA_1128 0.82 -0.9
475,127 - 9496 mRNA_1128 0.84 -1.9
475,402 + 9496 mRNA_1128 0.90 0.1
475,680 + -0.8
475,815 - -1.6
475,862 + -1.3
476,143 - -2.5
476,356 + 9497 mRNA_1129 0.10 -2.3
476,754 - 9497 mRNA_1129 0.22 -4.9