Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1127

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1126: 9494 - K15334 NCL1, TRM4 multisite-specific tRNA-(cytosine-C5)-methyltransferase, at 463118 to 466210 9494 mRNA_1127: 9495 - K00143 LYS2 L-aminoadipate-semialdehyde dehydrogenase, at 466494 to 471179 9495 mRNA_1128: 9496 - Interpro Arrestin (or S-antigen), N-terminal domain 0, at 471353 to 475855 9496

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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465,853 + 9494 mRNA_1126 0.88 -0.5
466,275 - 0.7
466,276 + -0.1
466,280 + -1.9
466,284 + -2.3
466,285 + -1.0
466,286 - -1.6
466,286 + -2.6
466,286 - -1.7
466,359 + -2.4
466,359 - -0.4
466,362 + -1.0
466,362 - 0.8
466,362 + 0.8
466,368 - -2.5
466,370 - 1.1
466,371 - -1.2
466,373 + -4.2
466,374 - -3.6
466,387 + -1.0
466,392 + -3.8
466,412 + -2.9
466,422 - -1.9
466,819 - -1.3
466,933 + -1.7
466,951 - -0.6
466,965 + 9495 mRNA_1127 0.10 1.0
467,936 - 9495 mRNA_1127 0.31 -1.0
470,341 - 9495 mRNA_1127 0.82 -1.5
470,633 - 9495 mRNA_1127 0.88 -2.3
470,676 + 9495 mRNA_1127 0.89 -1.6
470,689 + 9495 mRNA_1127 0.90 -0.4
470,770 - -0.2
470,934 + -0.6
471,228 - -2.4
471,231 + -0.3
471,233 - 0.4
471,234 - -3.0
471,240 - -0.6
471,253 + -3.4
471,384 - -0.8
471,409 - -0.6
471,421 + -1.0
471,535 + -0.6
471,569 - -2.5
471,588 + 0.7
471,588 + -0.5
471,599 + 0.2
471,601 - -0.8
471,731 - -2.0
471,844 - 9496 mRNA_1128 0.11 -1.8
471,912 - 9496 mRNA_1128 0.12 -2.2